Experiment: Dictyostellum sp.mixed culture-2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS26580 and BWI76_RS26585 are separated by 262 nucleotides BWI76_RS26585 and BWI76_RS26590 are separated by 87 nucleotides BWI76_RS26590 and BWI76_RS26595 are separated by 231 nucleotides
BWI76_RS26580: BWI76_RS26580 - universal stress protein A, at 5,502,383 to 5,502,820
_RS26580
BWI76_RS26585: BWI76_RS26585 - MFS transporter, at 5,503,083 to 5,504,555
_RS26585
BWI76_RS26590: BWI76_RS26590 - transcriptional regulator, at 5,504,643 to 5,505,146
_RS26590
BWI76_RS26595: BWI76_RS26595 - FAD-dependent oxidoreductase, at 5,505,378 to 5,506,577
_RS26595
Position (kb)
5503
5504
5505 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 5502.085 kb on - strand at 5502.090 kb on + strand at 5502.161 kb on + strand at 5502.161 kb on + strand at 5502.283 kb on + strand at 5502.283 kb on + strand at 5502.291 kb on - strand at 5502.291 kb on - strand at 5502.344 kb on + strand at 5502.352 kb on - strand at 5502.381 kb on - strand at 5502.381 kb on - strand at 5502.381 kb on - strand at 5502.408 kb on + strand at 5502.408 kb on + strand at 5502.416 kb on - strand at 5502.416 kb on - strand at 5502.416 kb on - strand at 5502.469 kb on + strand, within BWI76_RS26580 at 5502.482 kb on - strand, within BWI76_RS26580 at 5502.485 kb on + strand, within BWI76_RS26580 at 5502.508 kb on - strand, within BWI76_RS26580 at 5502.515 kb on + strand, within BWI76_RS26580 at 5502.609 kb on - strand, within BWI76_RS26580 at 5502.627 kb on + strand, within BWI76_RS26580 at 5502.703 kb on - strand, within BWI76_RS26580 at 5502.739 kb on + strand, within BWI76_RS26580 at 5502.760 kb on + strand, within BWI76_RS26580 at 5502.770 kb on + strand, within BWI76_RS26580 at 5502.928 kb on + strand at 5502.946 kb on - strand at 5502.985 kb on + strand at 5502.993 kb on + strand at 5503.001 kb on - strand at 5503.010 kb on + strand at 5503.051 kb on - strand at 5503.071 kb on - strand at 5503.268 kb on + strand, within BWI76_RS26585 at 5503.277 kb on + strand, within BWI76_RS26585 at 5503.453 kb on - strand, within BWI76_RS26585 at 5503.606 kb on + strand, within BWI76_RS26585 at 5503.606 kb on + strand, within BWI76_RS26585 at 5503.614 kb on - strand, within BWI76_RS26585 at 5503.614 kb on - strand, within BWI76_RS26585 at 5503.692 kb on - strand, within BWI76_RS26585 at 5503.759 kb on - strand, within BWI76_RS26585 at 5503.894 kb on + strand, within BWI76_RS26585 at 5503.902 kb on - strand, within BWI76_RS26585 at 5503.924 kb on + strand, within BWI76_RS26585 at 5503.930 kb on - strand, within BWI76_RS26585 at 5504.044 kb on + strand, within BWI76_RS26585 at 5504.076 kb on + strand, within BWI76_RS26585 at 5504.078 kb on + strand, within BWI76_RS26585 at 5504.099 kb on + strand, within BWI76_RS26585 at 5504.106 kb on + strand, within BWI76_RS26585 at 5504.234 kb on + strand, within BWI76_RS26585 at 5504.251 kb on - strand, within BWI76_RS26585 at 5504.320 kb on - strand, within BWI76_RS26585 at 5504.583 kb on - strand at 5504.670 kb on - strand at 5504.741 kb on + strand, within BWI76_RS26590 at 5504.915 kb on + strand, within BWI76_RS26590 at 5504.930 kb on - strand, within BWI76_RS26590 at 5505.143 kb on - strand at 5505.380 kb on - strand at 5505.429 kb on + strand at 5505.437 kb on - strand at 5505.483 kb on - strand at 5505.499 kb on - strand, within BWI76_RS26595 at 5505.504 kb on - strand, within BWI76_RS26595
Per-strain Table
Position Strand Gene LocusTag Fraction Dictyostellum sp.mixed culture-2 remove 5,502,085 - -1.2 5,502,090 + +0.8 5,502,161 + +0.1 5,502,161 + -0.6 5,502,283 + +1.0 5,502,283 + +0.8 5,502,291 - -0.6 5,502,291 - +0.7 5,502,344 + -1.2 5,502,352 - +0.5 5,502,381 - +0.8 5,502,381 - -1.7 5,502,381 - +1.6 5,502,408 + -1.0 5,502,408 + -0.6 5,502,416 - -0.7 5,502,416 - +0.6 5,502,416 - +0.9 5,502,469 + BWI76_RS26580 0.20 -0.4 5,502,482 - BWI76_RS26580 0.23 -2.7 5,502,485 + BWI76_RS26580 0.23 +2.0 5,502,508 - BWI76_RS26580 0.29 -0.0 5,502,515 + BWI76_RS26580 0.30 -0.3 5,502,609 - BWI76_RS26580 0.52 +0.9 5,502,627 + BWI76_RS26580 0.56 +0.3 5,502,703 - BWI76_RS26580 0.73 -0.3 5,502,739 + BWI76_RS26580 0.81 -1.3 5,502,760 + BWI76_RS26580 0.86 -0.2 5,502,770 + BWI76_RS26580 0.88 +0.7 5,502,928 + +0.0 5,502,946 - -0.0 5,502,985 + -1.1 5,502,993 + -0.7 5,503,001 - -0.7 5,503,010 + +0.9 5,503,051 - +1.5 5,503,071 - +0.4 5,503,268 + BWI76_RS26585 0.13 +3.2 5,503,277 + BWI76_RS26585 0.13 -0.0 5,503,453 - BWI76_RS26585 0.25 +0.7 5,503,606 + BWI76_RS26585 0.36 +3.2 5,503,606 + BWI76_RS26585 0.36 -0.6 5,503,614 - BWI76_RS26585 0.36 +0.7 5,503,614 - BWI76_RS26585 0.36 -0.7 5,503,692 - BWI76_RS26585 0.41 +0.4 5,503,759 - BWI76_RS26585 0.46 -0.6 5,503,894 + BWI76_RS26585 0.55 +1.3 5,503,902 - BWI76_RS26585 0.56 -1.0 5,503,924 + BWI76_RS26585 0.57 +1.2 5,503,930 - BWI76_RS26585 0.58 +1.4 5,504,044 + BWI76_RS26585 0.65 +0.3 5,504,076 + BWI76_RS26585 0.67 +1.0 5,504,078 + BWI76_RS26585 0.68 -1.1 5,504,099 + BWI76_RS26585 0.69 +0.0 5,504,106 + BWI76_RS26585 0.69 +0.0 5,504,234 + BWI76_RS26585 0.78 -1.0 5,504,251 - BWI76_RS26585 0.79 +1.5 5,504,320 - BWI76_RS26585 0.84 +0.4 5,504,583 - +0.4 5,504,670 - -0.8 5,504,741 + BWI76_RS26590 0.19 -0.6 5,504,915 + BWI76_RS26590 0.54 -0.3 5,504,930 - BWI76_RS26590 0.57 -0.6 5,505,143 - +1.3 5,505,380 - +0.7 5,505,429 + -0.6 5,505,437 - +0.0 5,505,483 - -0.1 5,505,499 - BWI76_RS26595 0.10 +0.3 5,505,504 - BWI76_RS26595 0.10 +1.6
Or see this region's nucleotide sequence