Experiment: Dictyostellum sp.mixed culture-2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS25420 and BWI76_RS25425 are separated by 412 nucleotides BWI76_RS25425 and BWI76_RS25430 are separated by 354 nucleotides BWI76_RS25430 and BWI76_RS25435 are separated by 103 nucleotides
BWI76_RS25420: BWI76_RS25420 - malate dehydrogenase, at 5,283,233 to 5,284,171
_RS25420
BWI76_RS25425: BWI76_RS25425 - arginine repressor, at 5,284,584 to 5,285,054
_RS25425
BWI76_RS25430: BWI76_RS25430 - membrane protein, at 5,285,409 to 5,285,672
_RS25430
BWI76_RS25435: BWI76_RS25435 - membrane protein, at 5,285,776 to 5,286,042
_RS25435
Position (kb) 5284
5285
5286 Strain fitness (log2 ratio) -2
-1
0
1
2 at 5283.633 kb on + strand, within BWI76_RS25420 at 5283.826 kb on + strand, within BWI76_RS25420 at 5283.844 kb on - strand, within BWI76_RS25420 at 5283.856 kb on - strand, within BWI76_RS25420 at 5284.085 kb on + strand at 5284.092 kb on - strand at 5284.092 kb on - strand at 5284.106 kb on + strand at 5284.278 kb on + strand at 5284.299 kb on - strand at 5284.333 kb on - strand at 5284.335 kb on + strand at 5284.343 kb on - strand at 5284.343 kb on - strand at 5284.380 kb on + strand at 5284.634 kb on + strand, within BWI76_RS25425 at 5284.914 kb on + strand, within BWI76_RS25425 at 5285.025 kb on + strand at 5285.498 kb on + strand, within BWI76_RS25430 at 5285.498 kb on + strand, within BWI76_RS25430 at 5285.506 kb on - strand, within BWI76_RS25430 at 5285.507 kb on - strand, within BWI76_RS25430 at 5285.545 kb on + strand, within BWI76_RS25430 at 5285.620 kb on + strand, within BWI76_RS25430 at 5285.632 kb on + strand, within BWI76_RS25430 at 5285.637 kb on + strand, within BWI76_RS25430 at 5285.717 kb on - strand at 5285.811 kb on + strand, within BWI76_RS25435 at 5285.891 kb on - strand, within BWI76_RS25435 at 5285.908 kb on + strand, within BWI76_RS25435 at 5286.018 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Dictyostellum sp.mixed culture-2 remove 5,283,633 + BWI76_RS25420 0.43 -0.0 5,283,826 + BWI76_RS25420 0.63 +0.6 5,283,844 - BWI76_RS25420 0.65 +0.3 5,283,856 - BWI76_RS25420 0.66 +0.1 5,284,085 + +0.2 5,284,092 - -0.4 5,284,092 - +0.4 5,284,106 + -0.2 5,284,278 + -0.4 5,284,299 - -0.1 5,284,333 - -2.3 5,284,335 + -0.4 5,284,343 - +0.9 5,284,343 - +0.3 5,284,380 + -0.4 5,284,634 + BWI76_RS25425 0.11 -1.0 5,284,914 + BWI76_RS25425 0.70 -0.1 5,285,025 + -2.7 5,285,498 + BWI76_RS25430 0.34 -1.3 5,285,498 + BWI76_RS25430 0.34 +0.7 5,285,506 - BWI76_RS25430 0.37 -1.0 5,285,507 - BWI76_RS25430 0.37 +1.1 5,285,545 + BWI76_RS25430 0.52 +0.4 5,285,620 + BWI76_RS25430 0.80 -0.1 5,285,632 + BWI76_RS25430 0.84 -1.2 5,285,637 + BWI76_RS25430 0.86 +1.9 5,285,717 - +0.5 5,285,811 + BWI76_RS25435 0.13 +1.0 5,285,891 - BWI76_RS25435 0.43 +0.4 5,285,908 + BWI76_RS25435 0.49 -0.7 5,286,018 + +1.6
Or see this region's nucleotide sequence