Experiment: Dictyostellum sp.mixed culture-2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS24970 and BWI76_RS24975 are separated by 8 nucleotides BWI76_RS24975 and BWI76_RS24980 are separated by 143 nucleotides
BWI76_RS24970: BWI76_RS24970 - peptidase U32, at 5,199,669 to 5,200,664
_RS24970
BWI76_RS24975: BWI76_RS24975 - U32 family peptidase, at 5,200,673 to 5,201,551
_RS24975
BWI76_RS24980: BWI76_RS24980 - LLM class flavin-dependent oxidoreductase, at 5,201,695 to 5,202,702
_RS24980
Position (kb) 5200
5201
5202 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 5199.685 kb on - strand at 5199.826 kb on - strand, within BWI76_RS24970 at 5199.867 kb on + strand, within BWI76_RS24970 at 5199.869 kb on - strand, within BWI76_RS24970 at 5200.138 kb on - strand, within BWI76_RS24970 at 5200.429 kb on + strand, within BWI76_RS24970 at 5200.437 kb on - strand, within BWI76_RS24970 at 5200.437 kb on - strand, within BWI76_RS24970 at 5200.450 kb on - strand, within BWI76_RS24970 at 5200.634 kb on - strand at 5200.649 kb on + strand at 5200.830 kb on - strand, within BWI76_RS24975 at 5200.859 kb on - strand, within BWI76_RS24975 at 5200.886 kb on + strand, within BWI76_RS24975 at 5200.896 kb on + strand, within BWI76_RS24975 at 5200.896 kb on + strand, within BWI76_RS24975 at 5200.899 kb on - strand, within BWI76_RS24975 at 5200.904 kb on - strand, within BWI76_RS24975 at 5200.931 kb on - strand, within BWI76_RS24975 at 5201.048 kb on - strand, within BWI76_RS24975 at 5201.194 kb on + strand, within BWI76_RS24975 at 5201.270 kb on - strand, within BWI76_RS24975 at 5201.351 kb on + strand, within BWI76_RS24975 at 5201.379 kb on - strand, within BWI76_RS24975 at 5201.685 kb on - strand at 5201.780 kb on + strand at 5201.788 kb on - strand at 5201.849 kb on - strand, within BWI76_RS24980 at 5201.912 kb on - strand, within BWI76_RS24980 at 5201.985 kb on + strand, within BWI76_RS24980 at 5202.143 kb on + strand, within BWI76_RS24980 at 5202.214 kb on - strand, within BWI76_RS24980 at 5202.219 kb on - strand, within BWI76_RS24980 at 5202.221 kb on - strand, within BWI76_RS24980 at 5202.295 kb on + strand, within BWI76_RS24980 at 5202.303 kb on + strand, within BWI76_RS24980 at 5202.303 kb on - strand, within BWI76_RS24980 at 5202.421 kb on + strand, within BWI76_RS24980 at 5202.465 kb on + strand, within BWI76_RS24980 at 5202.492 kb on + strand, within BWI76_RS24980 at 5202.492 kb on + strand, within BWI76_RS24980 at 5202.503 kb on + strand, within BWI76_RS24980 at 5202.511 kb on - strand, within BWI76_RS24980
Per-strain Table
Position Strand Gene LocusTag Fraction Dictyostellum sp.mixed culture-2 remove 5,199,685 - +0.2 5,199,826 - BWI76_RS24970 0.16 -1.4 5,199,867 + BWI76_RS24970 0.20 -0.7 5,199,869 - BWI76_RS24970 0.20 +1.1 5,200,138 - BWI76_RS24970 0.47 -0.2 5,200,429 + BWI76_RS24970 0.76 -1.3 5,200,437 - BWI76_RS24970 0.77 +0.5 5,200,437 - BWI76_RS24970 0.77 -3.7 5,200,450 - BWI76_RS24970 0.78 -0.6 5,200,634 - -0.5 5,200,649 + +0.9 5,200,830 - BWI76_RS24975 0.18 -0.4 5,200,859 - BWI76_RS24975 0.21 -1.2 5,200,886 + BWI76_RS24975 0.24 -0.1 5,200,896 + BWI76_RS24975 0.25 -0.8 5,200,896 + BWI76_RS24975 0.25 -1.5 5,200,899 - BWI76_RS24975 0.26 +2.5 5,200,904 - BWI76_RS24975 0.26 +0.1 5,200,931 - BWI76_RS24975 0.29 +0.2 5,201,048 - BWI76_RS24975 0.43 -0.6 5,201,194 + BWI76_RS24975 0.59 -1.8 5,201,270 - BWI76_RS24975 0.68 -1.6 5,201,351 + BWI76_RS24975 0.77 -1.5 5,201,379 - BWI76_RS24975 0.80 -0.2 5,201,685 - +0.7 5,201,780 + -0.2 5,201,788 - -1.0 5,201,849 - BWI76_RS24980 0.15 +0.4 5,201,912 - BWI76_RS24980 0.22 +0.9 5,201,985 + BWI76_RS24980 0.29 -0.1 5,202,143 + BWI76_RS24980 0.44 +0.4 5,202,214 - BWI76_RS24980 0.51 -1.0 5,202,219 - BWI76_RS24980 0.52 -0.4 5,202,221 - BWI76_RS24980 0.52 +0.5 5,202,295 + BWI76_RS24980 0.60 +0.9 5,202,303 + BWI76_RS24980 0.60 +1.3 5,202,303 - BWI76_RS24980 0.60 -0.9 5,202,421 + BWI76_RS24980 0.72 -0.5 5,202,465 + BWI76_RS24980 0.76 +0.6 5,202,492 + BWI76_RS24980 0.79 +0.2 5,202,492 + BWI76_RS24980 0.79 -0.1 5,202,503 + BWI76_RS24980 0.80 +1.0 5,202,511 - BWI76_RS24980 0.81 +0.7
Or see this region's nucleotide sequence