Experiment: Dictyostellum sp.mixed culture-2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS24895 and BWI76_RS24900 are separated by 110 nucleotides BWI76_RS24900 and BWI76_RS24905 are separated by 64 nucleotides
BWI76_RS24895: BWI76_RS24895 - galactitol-1-phosphate 5-dehydrogenase, at 5,187,513 to 5,188,556
_RS24895
BWI76_RS24900: BWI76_RS24900 - DeoR family transcriptional regulator, at 5,188,667 to 5,189,440
_RS24900
BWI76_RS24905: BWI76_RS24905 - filamentation induced by cAMP protein fic, at 5,189,505 to 5,190,506
_RS24905
Position (kb) 5188
5189
5190 Strain fitness (log2 ratio) -2
-1
0
1 at 5187.899 kb on - strand, within BWI76_RS24895 at 5188.147 kb on + strand, within BWI76_RS24895 at 5188.147 kb on + strand, within BWI76_RS24895 at 5188.286 kb on + strand, within BWI76_RS24895 at 5188.324 kb on - strand, within BWI76_RS24895 at 5188.389 kb on - strand, within BWI76_RS24895 at 5188.500 kb on + strand at 5188.674 kb on + strand at 5188.833 kb on + strand, within BWI76_RS24900 at 5188.991 kb on + strand, within BWI76_RS24900 at 5189.060 kb on + strand, within BWI76_RS24900 at 5189.135 kb on + strand, within BWI76_RS24900 at 5189.410 kb on - strand at 5189.450 kb on - strand at 5189.470 kb on + strand at 5189.620 kb on + strand, within BWI76_RS24905 at 5189.627 kb on - strand, within BWI76_RS24905 at 5189.830 kb on - strand, within BWI76_RS24905 at 5189.844 kb on - strand, within BWI76_RS24905 at 5189.921 kb on + strand, within BWI76_RS24905 at 5189.976 kb on + strand, within BWI76_RS24905 at 5189.994 kb on + strand, within BWI76_RS24905 at 5190.067 kb on + strand, within BWI76_RS24905 at 5190.123 kb on + strand, within BWI76_RS24905 at 5190.300 kb on - strand, within BWI76_RS24905 at 5190.344 kb on - strand, within BWI76_RS24905 at 5190.344 kb on - strand, within BWI76_RS24905 at 5190.406 kb on + strand at 5190.410 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Dictyostellum sp.mixed culture-2 remove 5,187,899 - BWI76_RS24895 0.37 +0.5 5,188,147 + BWI76_RS24895 0.61 -0.4 5,188,147 + BWI76_RS24895 0.61 +0.1 5,188,286 + BWI76_RS24895 0.74 -0.3 5,188,324 - BWI76_RS24895 0.78 -0.2 5,188,389 - BWI76_RS24895 0.84 -1.1 5,188,500 + +0.6 5,188,674 + -2.0 5,188,833 + BWI76_RS24900 0.21 -2.3 5,188,991 + BWI76_RS24900 0.42 -0.0 5,189,060 + BWI76_RS24900 0.51 -1.6 5,189,135 + BWI76_RS24900 0.60 -1.0 5,189,410 - -0.7 5,189,450 - +0.6 5,189,470 + +1.6 5,189,620 + BWI76_RS24905 0.11 +1.1 5,189,627 - BWI76_RS24905 0.12 -1.2 5,189,830 - BWI76_RS24905 0.32 +1.6 5,189,844 - BWI76_RS24905 0.34 -0.4 5,189,921 + BWI76_RS24905 0.42 +0.2 5,189,976 + BWI76_RS24905 0.47 +0.2 5,189,994 + BWI76_RS24905 0.49 -0.4 5,190,067 + BWI76_RS24905 0.56 -0.5 5,190,123 + BWI76_RS24905 0.62 +1.5 5,190,300 - BWI76_RS24905 0.79 -1.8 5,190,344 - BWI76_RS24905 0.84 +0.7 5,190,344 - BWI76_RS24905 0.84 -0.6 5,190,406 + +0.3 5,190,410 - +0.1
Or see this region's nucleotide sequence