Experiment: Dictyostellum sp.mixed culture-2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS20980 and BWI76_RS20985 overlap by 26 nucleotides BWI76_RS20985 and BWI76_RS20990 are separated by 3 nucleotides
BWI76_RS20980: BWI76_RS20980 - MFS transporter, at 4,385,870 to 4,387,324
_RS20980
BWI76_RS20985: BWI76_RS20985 - glycosyl hydrolase family protein, at 4,387,299 to 4,388,396
_RS20985
BWI76_RS20990: BWI76_RS20990 - hypothetical protein, at 4,388,400 to 4,390,073
_RS20990
Position (kb)
4387
4388
4389 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 4386.369 kb on - strand, within BWI76_RS20980 at 4386.374 kb on + strand, within BWI76_RS20980 at 4386.393 kb on - strand, within BWI76_RS20980 at 4386.408 kb on + strand, within BWI76_RS20980 at 4386.555 kb on + strand, within BWI76_RS20980 at 4386.624 kb on - strand, within BWI76_RS20980 at 4386.893 kb on + strand, within BWI76_RS20980 at 4387.087 kb on - strand, within BWI76_RS20980 at 4387.127 kb on + strand, within BWI76_RS20980 at 4387.226 kb on - strand at 4387.486 kb on + strand, within BWI76_RS20985 at 4387.486 kb on + strand, within BWI76_RS20985 at 4387.494 kb on - strand, within BWI76_RS20985 at 4387.650 kb on + strand, within BWI76_RS20985 at 4387.797 kb on - strand, within BWI76_RS20985 at 4387.965 kb on - strand, within BWI76_RS20985 at 4388.299 kb on + strand at 4388.376 kb on + strand at 4388.384 kb on - strand at 4388.384 kb on - strand at 4388.643 kb on - strand, within BWI76_RS20990 at 4388.645 kb on + strand, within BWI76_RS20990 at 4388.841 kb on + strand, within BWI76_RS20990 at 4388.843 kb on - strand, within BWI76_RS20990 at 4389.159 kb on - strand, within BWI76_RS20990 at 4389.189 kb on - strand, within BWI76_RS20990 at 4389.225 kb on + strand, within BWI76_RS20990 at 4389.326 kb on + strand, within BWI76_RS20990 at 4389.339 kb on - strand, within BWI76_RS20990 at 4389.339 kb on - strand, within BWI76_RS20990
Per-strain Table
Position Strand Gene LocusTag Fraction Dictyostellum sp.mixed culture-2 remove 4,386,369 - BWI76_RS20980 0.34 -2.4 4,386,374 + BWI76_RS20980 0.35 -0.2 4,386,393 - BWI76_RS20980 0.36 -0.5 4,386,408 + BWI76_RS20980 0.37 -0.5 4,386,555 + BWI76_RS20980 0.47 +0.1 4,386,624 - BWI76_RS20980 0.52 +0.3 4,386,893 + BWI76_RS20980 0.70 +0.3 4,387,087 - BWI76_RS20980 0.84 +0.5 4,387,127 + BWI76_RS20980 0.86 -1.7 4,387,226 - -1.6 4,387,486 + BWI76_RS20985 0.17 +2.0 4,387,486 + BWI76_RS20985 0.17 +1.3 4,387,494 - BWI76_RS20985 0.18 +1.3 4,387,650 + BWI76_RS20985 0.32 +0.4 4,387,797 - BWI76_RS20985 0.45 +0.2 4,387,965 - BWI76_RS20985 0.61 +1.1 4,388,299 + +0.3 4,388,376 + -0.3 4,388,384 - -0.5 4,388,384 - -0.2 4,388,643 - BWI76_RS20990 0.15 +0.4 4,388,645 + BWI76_RS20990 0.15 +0.3 4,388,841 + BWI76_RS20990 0.26 -1.0 4,388,843 - BWI76_RS20990 0.26 -0.8 4,389,159 - BWI76_RS20990 0.45 +0.3 4,389,189 - BWI76_RS20990 0.47 -0.6 4,389,225 + BWI76_RS20990 0.49 -0.5 4,389,326 + BWI76_RS20990 0.55 +0.8 4,389,339 - BWI76_RS20990 0.56 -0.1 4,389,339 - BWI76_RS20990 0.56 -0.3
Or see this region's nucleotide sequence