Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS17675

Experiment: Dictyostellum sp.mixed culture-2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS17665 and BWI76_RS17670 are separated by 18 nucleotidesBWI76_RS17670 and BWI76_RS17675 overlap by 4 nucleotidesBWI76_RS17675 and BWI76_RS17680 overlap by 7 nucleotides BWI76_RS17665: BWI76_RS17665 - proteasome-type protease, at 3,669,489 to 3,670,241 _RS17665 BWI76_RS17670: BWI76_RS17670 - transglutaminase, at 3,670,260 to 3,671,075 _RS17670 BWI76_RS17675: BWI76_RS17675 - hypothetical protein, at 3,671,072 to 3,672,001 _RS17675 BWI76_RS17680: BWI76_RS17680 - hypothetical protein, at 3,671,995 to 3,673,434 _RS17680 Position (kb) 3671 3672 3673Strain fitness (log2 ratio) -3 -2 -1 0 1at 3670.295 kb on + strandat 3670.295 kb on + strandat 3670.366 kb on - strand, within BWI76_RS17670at 3670.908 kb on + strand, within BWI76_RS17670at 3670.950 kb on + strand, within BWI76_RS17670at 3671.105 kb on + strandat 3671.377 kb on - strand, within BWI76_RS17675at 3671.538 kb on - strand, within BWI76_RS17675at 3671.694 kb on - strand, within BWI76_RS17675at 3671.967 kb on + strandat 3672.191 kb on - strand, within BWI76_RS17680at 3672.268 kb on - strand, within BWI76_RS17680at 3672.342 kb on + strand, within BWI76_RS17680at 3672.350 kb on - strand, within BWI76_RS17680at 3672.429 kb on + strand, within BWI76_RS17680at 3672.453 kb on + strand, within BWI76_RS17680at 3672.465 kb on - strand, within BWI76_RS17680at 3672.657 kb on - strand, within BWI76_RS17680at 3672.657 kb on - strand, within BWI76_RS17680at 3672.704 kb on - strand, within BWI76_RS17680at 3672.745 kb on + strand, within BWI76_RS17680at 3672.843 kb on + strand, within BWI76_RS17680at 3672.843 kb on + strand, within BWI76_RS17680at 3672.848 kb on + strand, within BWI76_RS17680at 3672.856 kb on - strand, within BWI76_RS17680

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Per-strain Table

Position Strand Gene LocusTag Fraction Dictyostellum sp.mixed culture-2
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3,670,295 + +0.2
3,670,295 + -0.5
3,670,366 - BWI76_RS17670 0.13 +0.2
3,670,908 + BWI76_RS17670 0.79 +0.0
3,670,950 + BWI76_RS17670 0.85 -0.6
3,671,105 + -0.4
3,671,377 - BWI76_RS17675 0.33 -1.5
3,671,538 - BWI76_RS17675 0.50 -1.4
3,671,694 - BWI76_RS17675 0.67 -2.9
3,671,967 + +0.1
3,672,191 - BWI76_RS17680 0.14 -0.3
3,672,268 - BWI76_RS17680 0.19 -0.3
3,672,342 + BWI76_RS17680 0.24 +0.9
3,672,350 - BWI76_RS17680 0.25 -0.3
3,672,429 + BWI76_RS17680 0.30 -0.0
3,672,453 + BWI76_RS17680 0.32 -0.3
3,672,465 - BWI76_RS17680 0.33 -1.1
3,672,657 - BWI76_RS17680 0.46 +0.4
3,672,657 - BWI76_RS17680 0.46 +0.9
3,672,704 - BWI76_RS17680 0.49 +1.3
3,672,745 + BWI76_RS17680 0.52 -0.1
3,672,843 + BWI76_RS17680 0.59 -0.7
3,672,843 + BWI76_RS17680 0.59 -1.2
3,672,848 + BWI76_RS17680 0.59 -0.9
3,672,856 - BWI76_RS17680 0.60 +0.3

Or see this region's nucleotide sequence