Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS16875

Experiment: Dictyostellum sp.mixed culture-2

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntBWI76_RS16870 and BWI76_RS16875 are separated by 107 nucleotidesBWI76_RS16875 and BWI76_RS16880 are separated by 1 nucleotides BWI76_RS16870: BWI76_RS16870 - LysR family transcriptional regulator, at 3,498,725 to 3,499,618 _RS16870 BWI76_RS16875: BWI76_RS16875 - putative type I cysteine dioxygenase, at 3,499,726 to 3,500,322 _RS16875 BWI76_RS16880: BWI76_RS16880 - GlpE family protein, at 3,500,324 to 3,501,904 _RS16880 Position (kb) 3499 3500 3501Strain fitness (log2 ratio) -3 -2 -1 0 1at 3498.975 kb on + strand, within BWI76_RS16870at 3498.976 kb on - strand, within BWI76_RS16870at 3499.376 kb on - strand, within BWI76_RS16870at 3499.812 kb on + strand, within BWI76_RS16875at 3499.991 kb on + strand, within BWI76_RS16875at 3500.040 kb on - strand, within BWI76_RS16875at 3500.097 kb on + strand, within BWI76_RS16875at 3500.156 kb on + strand, within BWI76_RS16875at 3500.170 kb on - strandat 3500.658 kb on - strand, within BWI76_RS16880at 3500.753 kb on - strand, within BWI76_RS16880at 3500.885 kb on + strand, within BWI76_RS16880at 3501.077 kb on + strand, within BWI76_RS16880

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Dictyostellum sp.mixed culture-2
remove
3,498,975 + BWI76_RS16870 0.28 +0.6
3,498,976 - BWI76_RS16870 0.28 -0.3
3,499,376 - BWI76_RS16870 0.73 +0.9
3,499,812 + BWI76_RS16875 0.14 -2.9
3,499,991 + BWI76_RS16875 0.44 -1.3
3,500,040 - BWI76_RS16875 0.53 -0.3
3,500,097 + BWI76_RS16875 0.62 -0.2
3,500,156 + BWI76_RS16875 0.72 -1.3
3,500,170 - +1.1
3,500,658 - BWI76_RS16880 0.21 -0.9
3,500,753 - BWI76_RS16880 0.27 +0.9
3,500,885 + BWI76_RS16880 0.35 +0.5
3,501,077 + BWI76_RS16880 0.48 +1.5

Or see this region's nucleotide sequence