Experiment: Dictyostellum sp.mixed culture-2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS16760 and BWI76_RS16765 overlap by 8 nucleotides BWI76_RS16765 and BWI76_RS16770 are separated by 71 nucleotides
BWI76_RS16760: BWI76_RS16760 - lipase, at 3,471,793 to 3,472,863
_RS16760
BWI76_RS16765: BWI76_RS16765 - spermidine/putrescine ABC transporter permease, at 3,472,856 to 3,474,625
_RS16765
BWI76_RS16770: BWI76_RS16770 - extracellular solute-binding protein, at 3,474,697 to 3,475,785
_RS16770
Position (kb)
3472
3473
3474
3475 Strain fitness (log2 ratio)
-1
0
1 at 3471.859 kb on - strand at 3471.966 kb on - strand, within BWI76_RS16760 at 3471.970 kb on - strand, within BWI76_RS16760 at 3472.087 kb on - strand, within BWI76_RS16760 at 3472.494 kb on + strand at 3472.540 kb on - strand, within BWI76_RS16760 at 3472.540 kb on - strand, within BWI76_RS16760 at 3472.611 kb on + strand, within BWI76_RS16760 at 3472.998 kb on + strand at 3473.131 kb on + strand, within BWI76_RS16765 at 3473.269 kb on + strand, within BWI76_RS16765 at 3473.424 kb on - strand, within BWI76_RS16765 at 3473.999 kb on + strand, within BWI76_RS16765 at 3474.173 kb on + strand, within BWI76_RS16765 at 3474.843 kb on + strand, within BWI76_RS16770 at 3474.874 kb on - strand, within BWI76_RS16770 at 3474.897 kb on - strand, within BWI76_RS16770 at 3474.971 kb on + strand, within BWI76_RS16770 at 3474.979 kb on + strand, within BWI76_RS16770 at 3475.197 kb on - strand, within BWI76_RS16770 at 3475.274 kb on + strand, within BWI76_RS16770 at 3475.282 kb on - strand, within BWI76_RS16770 at 3475.456 kb on + strand, within BWI76_RS16770 at 3475.516 kb on - strand, within BWI76_RS16770
Per-strain Table
Position Strand Gene LocusTag Fraction Dictyostellum sp.mixed culture-2 remove 3,471,859 - +0.9 3,471,966 - BWI76_RS16760 0.16 -0.2 3,471,970 - BWI76_RS16760 0.17 +1.0 3,472,087 - BWI76_RS16760 0.27 -0.8 3,472,494 + -0.6 3,472,540 - BWI76_RS16760 0.70 +1.4 3,472,540 - BWI76_RS16760 0.70 +1.2 3,472,611 + BWI76_RS16760 0.76 -1.0 3,472,998 + -1.0 3,473,131 + BWI76_RS16765 0.16 +1.3 3,473,269 + BWI76_RS16765 0.23 +0.1 3,473,424 - BWI76_RS16765 0.32 +0.9 3,473,999 + BWI76_RS16765 0.65 +1.2 3,474,173 + BWI76_RS16765 0.74 +1.2 3,474,843 + BWI76_RS16770 0.13 -0.2 3,474,874 - BWI76_RS16770 0.16 +0.9 3,474,897 - BWI76_RS16770 0.18 -0.1 3,474,971 + BWI76_RS16770 0.25 -0.4 3,474,979 + BWI76_RS16770 0.26 -0.4 3,475,197 - BWI76_RS16770 0.46 +0.4 3,475,274 + BWI76_RS16770 0.53 +0.9 3,475,282 - BWI76_RS16770 0.54 +0.1 3,475,456 + BWI76_RS16770 0.70 +0.8 3,475,516 - BWI76_RS16770 0.75 -0.2
Or see this region's nucleotide sequence