Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS16645

Experiment: Dictyostellum sp.mixed culture-2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS16635 and BWI76_RS16640 are separated by 225 nucleotidesBWI76_RS16640 and BWI76_RS16645 are separated by 9 nucleotidesBWI76_RS16645 and BWI76_RS16650 are separated by 93 nucleotidesBWI76_RS16650 and BWI76_RS16655 are separated by 30 nucleotides BWI76_RS16635: BWI76_RS16635 - carbonate dehydratase, at 3,444,213 to 3,444,848 _RS16635 BWI76_RS16640: BWI76_RS16640 - threonine transporter, at 3,445,074 to 3,445,703 _RS16640 BWI76_RS16645: BWI76_RS16645 - DeoR family transcriptional regulator, at 3,445,713 to 3,446,483 _RS16645 BWI76_RS16650: BWI76_RS16650 - glyoxalase I, nickel isomerase, at 3,446,577 to 3,446,960 _RS16650 BWI76_RS16655: BWI76_RS16655 - CatA-like O-acetyltransferase, at 3,446,991 to 3,447,630 _RS16655 Position (kb) 3445 3446 3447Strain fitness (log2 ratio) -2 -1 0 1at 3444.738 kb on - strand, within BWI76_RS16635at 3444.963 kb on + strandat 3445.112 kb on - strandat 3445.124 kb on + strandat 3445.320 kb on - strand, within BWI76_RS16640at 3445.342 kb on - strand, within BWI76_RS16640at 3446.115 kb on - strand, within BWI76_RS16645at 3446.228 kb on - strand, within BWI76_RS16645at 3446.228 kb on - strand, within BWI76_RS16645at 3446.757 kb on - strand, within BWI76_RS16650at 3446.960 kb on + strandat 3446.981 kb on + strandat 3447.073 kb on + strand, within BWI76_RS16655at 3447.131 kb on - strand, within BWI76_RS16655at 3447.451 kb on - strand, within BWI76_RS16655at 3447.463 kb on - strand, within BWI76_RS16655

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Per-strain Table

Position Strand Gene LocusTag Fraction Dictyostellum sp.mixed culture-2
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3,444,738 - BWI76_RS16635 0.83 +0.4
3,444,963 + -0.9
3,445,112 - +0.3
3,445,124 + -0.2
3,445,320 - BWI76_RS16640 0.39 +0.4
3,445,342 - BWI76_RS16640 0.43 -0.5
3,446,115 - BWI76_RS16645 0.52 +0.4
3,446,228 - BWI76_RS16645 0.67 -1.8
3,446,228 - BWI76_RS16645 0.67 -1.4
3,446,757 - BWI76_RS16650 0.47 +0.3
3,446,960 + +0.3
3,446,981 + +0.7
3,447,073 + BWI76_RS16655 0.13 -2.5
3,447,131 - BWI76_RS16655 0.22 -0.3
3,447,451 - BWI76_RS16655 0.72 +0.5
3,447,463 - BWI76_RS16655 0.74 +0.1

Or see this region's nucleotide sequence