Experiment: Dictyostellum sp.mixed culture-2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS14970 and BWI76_RS14975 are separated by 12 nucleotides BWI76_RS14975 and BWI76_RS14980 overlap by 4 nucleotides BWI76_RS14980 and BWI76_RS14985 are separated by 4 nucleotides BWI76_RS14985 and BWI76_RS14990 overlap by 11 nucleotides
BWI76_RS14970: BWI76_RS14970 - pyrroline-5-carboxylate reductase, at 3,138,073 to 3,138,861
_RS14970
BWI76_RS14975: BWI76_RS14975 - glyoxalase-like domain protein, at 3,138,874 to 3,139,629
_RS14975
BWI76_RS14980: BWI76_RS14980 - hypothetical protein, at 3,139,626 to 3,140,156
_RS14980
BWI76_RS14985: BWI76_RS14985 - amino acid ABC transporter substrate-binding protein, at 3,140,161 to 3,141,003
_RS14985
BWI76_RS14990: BWI76_RS14990 - polar amino acid ABC transporter permease, at 3,140,993 to 3,141,745
_RS14990
Position (kb)
3139
3140
3141 Strain fitness (log2 ratio)
-2
-1
0
1 at 3139.204 kb on + strand, within BWI76_RS14975 at 3139.430 kb on + strand, within BWI76_RS14975 at 3139.477 kb on + strand, within BWI76_RS14975 at 3139.643 kb on + strand at 3140.090 kb on + strand, within BWI76_RS14980 at 3140.098 kb on - strand, within BWI76_RS14980 at 3140.122 kb on + strand at 3140.174 kb on + strand at 3140.207 kb on + strand at 3140.210 kb on - strand at 3140.222 kb on - strand at 3140.285 kb on - strand, within BWI76_RS14985 at 3140.558 kb on + strand, within BWI76_RS14985 at 3140.593 kb on - strand, within BWI76_RS14985 at 3140.667 kb on + strand, within BWI76_RS14985 at 3140.703 kb on - strand, within BWI76_RS14985 at 3140.714 kb on - strand, within BWI76_RS14985 at 3140.735 kb on - strand, within BWI76_RS14985 at 3140.736 kb on - strand, within BWI76_RS14985 at 3140.828 kb on - strand, within BWI76_RS14985 at 3140.894 kb on - strand, within BWI76_RS14985 at 3141.068 kb on + strand at 3141.076 kb on + strand, within BWI76_RS14990 at 3141.076 kb on + strand, within BWI76_RS14990 at 3141.084 kb on - strand, within BWI76_RS14990 at 3141.086 kb on + strand, within BWI76_RS14990 at 3141.089 kb on - strand, within BWI76_RS14990 at 3141.093 kb on + strand, within BWI76_RS14990 at 3141.094 kb on - strand, within BWI76_RS14990 at 3141.099 kb on - strand, within BWI76_RS14990 at 3141.118 kb on + strand, within BWI76_RS14990 at 3141.141 kb on - strand, within BWI76_RS14990 at 3141.148 kb on - strand, within BWI76_RS14990
Per-strain Table
Position Strand Gene LocusTag Fraction Dictyostellum sp.mixed culture-2 remove 3,139,204 + BWI76_RS14975 0.44 +0.8 3,139,430 + BWI76_RS14975 0.74 +0.4 3,139,477 + BWI76_RS14975 0.80 +0.9 3,139,643 + +0.4 3,140,090 + BWI76_RS14980 0.87 -2.1 3,140,098 - BWI76_RS14980 0.89 -1.4 3,140,122 + +0.2 3,140,174 + -0.3 3,140,207 + +0.1 3,140,210 - +0.3 3,140,222 - +1.3 3,140,285 - BWI76_RS14985 0.15 -1.0 3,140,558 + BWI76_RS14985 0.47 -0.0 3,140,593 - BWI76_RS14985 0.51 +0.9 3,140,667 + BWI76_RS14985 0.60 -2.4 3,140,703 - BWI76_RS14985 0.64 +1.2 3,140,714 - BWI76_RS14985 0.66 -0.3 3,140,735 - BWI76_RS14985 0.68 -0.5 3,140,736 - BWI76_RS14985 0.68 -0.4 3,140,828 - BWI76_RS14985 0.79 -1.0 3,140,894 - BWI76_RS14985 0.87 -0.6 3,141,068 + -0.2 3,141,076 + BWI76_RS14990 0.11 -0.2 3,141,076 + BWI76_RS14990 0.11 -0.3 3,141,084 - BWI76_RS14990 0.12 -0.3 3,141,086 + BWI76_RS14990 0.12 -1.1 3,141,089 - BWI76_RS14990 0.13 +1.3 3,141,093 + BWI76_RS14990 0.13 +1.0 3,141,094 - BWI76_RS14990 0.13 -0.3 3,141,099 - BWI76_RS14990 0.14 -0.0 3,141,118 + BWI76_RS14990 0.17 +1.7 3,141,141 - BWI76_RS14990 0.20 -0.5 3,141,148 - BWI76_RS14990 0.21 -0.3
Or see this region's nucleotide sequence