Experiment: Dictyostellum sp.mixed culture-2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS14680 and BWI76_RS14685 overlap by 1 nucleotides BWI76_RS14685 and BWI76_RS14690 are separated by 32 nucleotides BWI76_RS14690 and BWI76_RS14695 are separated by 19 nucleotides
BWI76_RS14680: BWI76_RS14680 - SefF, at 3,082,377 to 3,082,901
_RS14680
BWI76_RS14685: BWI76_RS14685 - fimbrial protein, at 3,082,901 to 3,083,494
_RS14685
BWI76_RS14690: BWI76_RS14690 - SefD, at 3,083,527 to 3,084,261
_RS14690
BWI76_RS14695: BWI76_RS14695 - fimbrial biogenesis outer membrane usher protein, at 3,084,281 to 3,086,782
_RS14695
Position (kb)
3083
3084
3085 Strain fitness (log2 ratio)
-1
0
1 at 3082.639 kb on - strand, within BWI76_RS14680 at 3082.708 kb on - strand, within BWI76_RS14680 at 3082.828 kb on - strand, within BWI76_RS14680 at 3082.871 kb on + strand at 3082.924 kb on + strand at 3083.280 kb on + strand, within BWI76_RS14685 at 3083.512 kb on - strand at 3083.712 kb on + strand, within BWI76_RS14690 at 3083.894 kb on - strand, within BWI76_RS14690 at 3084.099 kb on + strand, within BWI76_RS14690 at 3084.107 kb on - strand, within BWI76_RS14690 at 3084.107 kb on - strand, within BWI76_RS14690 at 3084.180 kb on - strand, within BWI76_RS14690 at 3084.180 kb on - strand, within BWI76_RS14690 at 3084.190 kb on - strand at 3084.335 kb on - strand at 3084.369 kb on + strand at 3084.462 kb on - strand at 3084.549 kb on - strand, within BWI76_RS14695 at 3084.923 kb on - strand, within BWI76_RS14695 at 3084.923 kb on - strand, within BWI76_RS14695 at 3085.171 kb on + strand, within BWI76_RS14695 at 3085.237 kb on - strand, within BWI76_RS14695
Per-strain Table
Position Strand Gene LocusTag Fraction Dictyostellum sp.mixed culture-2 remove 3,082,639 - BWI76_RS14680 0.50 +1.2 3,082,708 - BWI76_RS14680 0.63 -0.4 3,082,828 - BWI76_RS14680 0.86 +0.1 3,082,871 + -0.8 3,082,924 + -1.0 3,083,280 + BWI76_RS14685 0.64 -1.0 3,083,512 - +0.4 3,083,712 + BWI76_RS14690 0.25 +1.0 3,083,894 - BWI76_RS14690 0.50 +1.2 3,084,099 + BWI76_RS14690 0.78 +0.4 3,084,107 - BWI76_RS14690 0.79 +0.3 3,084,107 - BWI76_RS14690 0.79 -0.1 3,084,180 - BWI76_RS14690 0.89 +1.0 3,084,180 - BWI76_RS14690 0.89 +0.5 3,084,190 - +0.7 3,084,335 - +0.8 3,084,369 + +0.2 3,084,462 - -0.0 3,084,549 - BWI76_RS14695 0.11 +0.4 3,084,923 - BWI76_RS14695 0.26 +0.7 3,084,923 - BWI76_RS14695 0.26 +0.3 3,085,171 + BWI76_RS14695 0.36 +1.6 3,085,237 - BWI76_RS14695 0.38 +0.8
Or see this region's nucleotide sequence