Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS13920

Experiment: Dictyostellum sp.mixed culture-2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS13915 and BWI76_RS13920 are separated by 141 nucleotidesBWI76_RS13920 and BWI76_RS13925 are separated by 261 nucleotides BWI76_RS13915: BWI76_RS13915 - magnesium transport protein MgtC, at 2,903,346 to 2,904,029 _RS13915 BWI76_RS13920: BWI76_RS13920 - magnesium-translocating P-type ATPase, at 2,904,171 to 2,906,903 _RS13920 BWI76_RS13925: BWI76_RS13925 - catalase/peroxidase HPI, at 2,907,165 to 2,909,348 _RS13925 Position (kb) 2904 2905 2906 2907Strain fitness (log2 ratio) -6 -5 -4 -3 -2 -1 0 1 2at 2903.196 kb on + strandat 2903.204 kb on + strandat 2903.216 kb on - strandat 2903.346 kb on + strandat 2903.387 kb on + strandat 2903.410 kb on - strandat 2903.442 kb on - strand, within BWI76_RS13915at 2903.442 kb on - strand, within BWI76_RS13915at 2903.444 kb on + strand, within BWI76_RS13915at 2903.444 kb on + strand, within BWI76_RS13915at 2903.459 kb on + strand, within BWI76_RS13915at 2903.492 kb on - strand, within BWI76_RS13915at 2903.524 kb on + strandat 2903.529 kb on - strand, within BWI76_RS13915at 2903.561 kb on - strand, within BWI76_RS13915at 2903.586 kb on + strand, within BWI76_RS13915at 2903.632 kb on - strand, within BWI76_RS13915at 2903.664 kb on - strand, within BWI76_RS13915at 2903.664 kb on - strand, within BWI76_RS13915at 2903.664 kb on - strand, within BWI76_RS13915at 2903.664 kb on - strand, within BWI76_RS13915at 2903.674 kb on - strand, within BWI76_RS13915at 2903.674 kb on - strand, within BWI76_RS13915at 2903.674 kb on - strand, within BWI76_RS13915at 2903.674 kb on - strand, within BWI76_RS13915at 2903.784 kb on - strand, within BWI76_RS13915at 2903.832 kb on - strand, within BWI76_RS13915at 2903.857 kb on + strand, within BWI76_RS13915at 2903.858 kb on - strand, within BWI76_RS13915at 2903.895 kb on + strand, within BWI76_RS13915at 2903.895 kb on + strand, within BWI76_RS13915at 2903.895 kb on + strand, within BWI76_RS13915at 2903.927 kb on + strandat 2903.927 kb on + strand, within BWI76_RS13915at 2903.927 kb on + strand, within BWI76_RS13915at 2903.952 kb on + strand, within BWI76_RS13915at 2904.010 kb on + strandat 2904.018 kb on - strandat 2904.023 kb on + strandat 2904.023 kb on + strandat 2904.023 kb on + strandat 2904.023 kb on + strandat 2904.023 kb on + strandat 2904.023 kb on + strandat 2904.023 kb on + strandat 2904.031 kb on - strandat 2904.033 kb on - strandat 2904.053 kb on + strandat 2904.093 kb on + strandat 2904.101 kb on - strandat 2904.231 kb on - strandat 2904.264 kb on + strandat 2904.274 kb on + strandat 2904.288 kb on - strandat 2904.296 kb on + strandat 2904.296 kb on + strandat 2904.304 kb on - strandat 2904.330 kb on - strandat 2904.334 kb on + strandat 2904.334 kb on + strandat 2904.356 kb on - strandat 2904.368 kb on + strandat 2904.433 kb on + strandat 2904.475 kb on + strand, within BWI76_RS13920at 2904.625 kb on + strand, within BWI76_RS13920at 2904.969 kb on + strand, within BWI76_RS13920at 2904.994 kb on - strand, within BWI76_RS13920at 2905.184 kb on + strand, within BWI76_RS13920at 2905.215 kb on - strand, within BWI76_RS13920at 2905.275 kb on + strand, within BWI76_RS13920at 2905.357 kb on + strand, within BWI76_RS13920at 2905.724 kb on - strand, within BWI76_RS13920at 2905.912 kb on + strand, within BWI76_RS13920at 2905.950 kb on - strand, within BWI76_RS13920at 2906.322 kb on - strand, within BWI76_RS13920at 2906.606 kb on + strand, within BWI76_RS13920at 2907.013 kb on + strandat 2907.707 kb on - strand, within BWI76_RS13925at 2907.808 kb on - strand, within BWI76_RS13925

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Per-strain Table

Position Strand Gene LocusTag Fraction Dictyostellum sp.mixed culture-2
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2,903,196 + -2.3
2,903,204 + -0.7
2,903,216 - -1.5
2,903,346 + +0.1
2,903,387 + -3.9
2,903,410 - -0.7
2,903,442 - BWI76_RS13915 0.14 -2.5
2,903,442 - BWI76_RS13915 0.14 -0.9
2,903,444 + BWI76_RS13915 0.14 +0.3
2,903,444 + BWI76_RS13915 0.14 -2.5
2,903,459 + BWI76_RS13915 0.17 -0.9
2,903,492 - BWI76_RS13915 0.21 -1.9
2,903,524 + -0.9
2,903,529 - BWI76_RS13915 0.27 -3.5
2,903,561 - BWI76_RS13915 0.31 -3.8
2,903,586 + BWI76_RS13915 0.35 -2.8
2,903,632 - BWI76_RS13915 0.42 -1.8
2,903,664 - BWI76_RS13915 0.46 -4.4
2,903,664 - BWI76_RS13915 0.46 -3.9
2,903,664 - BWI76_RS13915 0.46 -4.2
2,903,664 - BWI76_RS13915 0.46 -2.8
2,903,674 - BWI76_RS13915 0.48 -2.5
2,903,674 - BWI76_RS13915 0.48 -1.5
2,903,674 - BWI76_RS13915 0.48 -2.3
2,903,674 - BWI76_RS13915 0.48 -1.0
2,903,784 - BWI76_RS13915 0.64 -0.5
2,903,832 - BWI76_RS13915 0.71 -1.0
2,903,857 + BWI76_RS13915 0.75 -1.5
2,903,858 - BWI76_RS13915 0.75 -1.2
2,903,895 + BWI76_RS13915 0.80 -0.7
2,903,895 + BWI76_RS13915 0.80 -1.7
2,903,895 + BWI76_RS13915 0.80 -2.6
2,903,927 + -0.5
2,903,927 + BWI76_RS13915 0.85 -4.4
2,903,927 + BWI76_RS13915 0.85 -3.0
2,903,952 + BWI76_RS13915 0.89 -2.6
2,904,010 + -1.6
2,904,018 - -1.2
2,904,023 + -1.4
2,904,023 + +0.3
2,904,023 + -2.5
2,904,023 + -0.4
2,904,023 + -1.3
2,904,023 + -1.9
2,904,023 + +0.1
2,904,031 - -2.0
2,904,033 - -0.9
2,904,053 + +0.4
2,904,093 + -3.4
2,904,101 - +0.1
2,904,231 - +2.1
2,904,264 + -4.7
2,904,274 + -3.0
2,904,288 - -3.9
2,904,296 + -2.7
2,904,296 + -5.5
2,904,304 - -0.3
2,904,330 - -1.9
2,904,334 + -4.2
2,904,334 + -2.5
2,904,356 - -2.5
2,904,368 + -3.7
2,904,433 + -5.5
2,904,475 + BWI76_RS13920 0.11 -1.6
2,904,625 + BWI76_RS13920 0.17 -0.2
2,904,969 + BWI76_RS13920 0.29 -3.2
2,904,994 - BWI76_RS13920 0.30 -3.6
2,905,184 + BWI76_RS13920 0.37 -4.1
2,905,215 - BWI76_RS13920 0.38 -3.3
2,905,275 + BWI76_RS13920 0.40 -4.2
2,905,357 + BWI76_RS13920 0.43 -3.1
2,905,724 - BWI76_RS13920 0.57 -4.8
2,905,912 + BWI76_RS13920 0.64 -5.4
2,905,950 - BWI76_RS13920 0.65 -6.2
2,906,322 - BWI76_RS13920 0.79 -0.5
2,906,606 + BWI76_RS13920 0.89 -3.5
2,907,013 + -1.3
2,907,707 - BWI76_RS13925 0.25 +0.5
2,907,808 - BWI76_RS13925 0.29 -0.8

Or see this region's nucleotide sequence