Experiment: Dictyostellum sp.mixed culture-2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS13405 and BWI76_RS13410 are separated by 19 nucleotides BWI76_RS13410 and BWI76_RS13415 are separated by 1 nucleotides BWI76_RS13415 and BWI76_RS13420 overlap by 11 nucleotides
BWI76_RS13405: BWI76_RS13405 - spermidine/putrescine ABC transporter substrate-binding protein, at 2,796,103 to 2,797,248
_RS13405
BWI76_RS13410: BWI76_RS13410 - polyamine ABC transporter ATP-binding protein, at 2,797,268 to 2,798,278
_RS13410
BWI76_RS13415: BWI76_RS13415 - spermidine/putrescine ABC transporter permease, at 2,798,280 to 2,799,209
_RS13415
BWI76_RS13420: BWI76_RS13420 - ABC transporter permease, at 2,799,199 to 2,800,005
_RS13420
Position (kb)
2797
2798
2799 Strain fitness (log2 ratio)
-1
0
1
2 at 2796.362 kb on + strand, within BWI76_RS13405 at 2796.370 kb on - strand, within BWI76_RS13405 at 2796.510 kb on + strand, within BWI76_RS13405 at 2796.946 kb on + strand, within BWI76_RS13405 at 2796.985 kb on + strand, within BWI76_RS13405 at 2797.092 kb on + strand, within BWI76_RS13405 at 2797.769 kb on - strand, within BWI76_RS13410 at 2797.780 kb on + strand, within BWI76_RS13410 at 2797.839 kb on + strand, within BWI76_RS13410 at 2798.327 kb on + strand at 2798.475 kb on - strand, within BWI76_RS13415 at 2798.596 kb on + strand, within BWI76_RS13415 at 2798.604 kb on - strand, within BWI76_RS13415 at 2798.693 kb on - strand, within BWI76_RS13415 at 2799.088 kb on + strand, within BWI76_RS13415
Per-strain Table
Position Strand Gene LocusTag Fraction Dictyostellum sp.mixed culture-2 remove 2,796,362 + BWI76_RS13405 0.23 -0.3 2,796,370 - BWI76_RS13405 0.23 -0.8 2,796,510 + BWI76_RS13405 0.36 +0.3 2,796,946 + BWI76_RS13405 0.74 +0.6 2,796,985 + BWI76_RS13405 0.77 +2.6 2,797,092 + BWI76_RS13405 0.86 -0.7 2,797,769 - BWI76_RS13410 0.50 +0.4 2,797,780 + BWI76_RS13410 0.51 +2.2 2,797,839 + BWI76_RS13410 0.56 +0.9 2,798,327 + -0.3 2,798,475 - BWI76_RS13415 0.21 +0.2 2,798,596 + BWI76_RS13415 0.34 +0.9 2,798,604 - BWI76_RS13415 0.35 +1.7 2,798,693 - BWI76_RS13415 0.44 +0.5 2,799,088 + BWI76_RS13415 0.87 -0.3
Or see this region's nucleotide sequence