Experiment: Dictyostellum sp.mixed culture-2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS13340 and BWI76_RS13345 are separated by 138 nucleotides BWI76_RS13345 and BWI76_RS13350 are separated by 88 nucleotides BWI76_RS13350 and BWI76_RS13355 are separated by 183 nucleotides
BWI76_RS13340: BWI76_RS13340 - peptide ABC transporter substrate-binding protein, at 2,781,998 to 2,783,590
_RS13340
BWI76_RS13345: BWI76_RS13345 - DUF3313 domain-containing protein, at 2,783,729 to 2,784,397
_RS13345
BWI76_RS13350: BWI76_RS13350 - EamA family transporter, at 2,784,486 to 2,785,394
_RS13350
BWI76_RS13355: BWI76_RS13355 - AraC family transcriptional regulator, at 2,785,578 to 2,786,444
_RS13355
Position (kb)
2784
2785
2786 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2783.527 kb on + strand at 2783.527 kb on + strand at 2783.528 kb on - strand at 2783.675 kb on - strand at 2783.686 kb on + strand at 2783.717 kb on + strand at 2783.723 kb on + strand at 2783.725 kb on - strand at 2783.877 kb on + strand, within BWI76_RS13345 at 2783.877 kb on + strand, within BWI76_RS13345 at 2783.877 kb on + strand, within BWI76_RS13345 at 2783.885 kb on - strand, within BWI76_RS13345 at 2783.887 kb on + strand, within BWI76_RS13345 at 2783.949 kb on + strand, within BWI76_RS13345 at 2783.949 kb on + strand, within BWI76_RS13345 at 2783.957 kb on - strand, within BWI76_RS13345 at 2783.973 kb on + strand, within BWI76_RS13345 at 2783.974 kb on - strand, within BWI76_RS13345 at 2784.018 kb on + strand, within BWI76_RS13345 at 2784.082 kb on - strand, within BWI76_RS13345 at 2784.298 kb on - strand, within BWI76_RS13345 at 2784.569 kb on + strand at 2784.655 kb on + strand, within BWI76_RS13350 at 2784.696 kb on + strand, within BWI76_RS13350 at 2784.744 kb on + strand, within BWI76_RS13350 at 2784.904 kb on - strand, within BWI76_RS13350 at 2784.978 kb on + strand, within BWI76_RS13350 at 2785.265 kb on + strand, within BWI76_RS13350 at 2785.383 kb on - strand at 2785.441 kb on - strand at 2785.441 kb on - strand at 2785.533 kb on - strand at 2785.544 kb on + strand at 2785.828 kb on + strand, within BWI76_RS13355 at 2785.912 kb on - strand, within BWI76_RS13355 at 2786.127 kb on - strand, within BWI76_RS13355 at 2786.288 kb on - strand, within BWI76_RS13355
Per-strain Table
Position Strand Gene LocusTag Fraction Dictyostellum sp.mixed culture-2 remove 2,783,527 + +1.1 2,783,527 + +1.1 2,783,528 - +0.2 2,783,675 - +0.2 2,783,686 + +0.1 2,783,717 + -0.2 2,783,723 + -0.5 2,783,725 - +0.1 2,783,877 + BWI76_RS13345 0.22 +1.3 2,783,877 + BWI76_RS13345 0.22 +0.1 2,783,877 + BWI76_RS13345 0.22 -0.1 2,783,885 - BWI76_RS13345 0.23 -0.4 2,783,887 + BWI76_RS13345 0.24 +0.5 2,783,949 + BWI76_RS13345 0.33 -1.6 2,783,949 + BWI76_RS13345 0.33 -0.5 2,783,957 - BWI76_RS13345 0.34 +0.8 2,783,973 + BWI76_RS13345 0.36 +0.4 2,783,974 - BWI76_RS13345 0.37 -0.6 2,784,018 + BWI76_RS13345 0.43 -0.4 2,784,082 - BWI76_RS13345 0.53 +0.1 2,784,298 - BWI76_RS13345 0.85 -1.2 2,784,569 + -0.0 2,784,655 + BWI76_RS13350 0.19 +1.1 2,784,696 + BWI76_RS13350 0.23 -1.0 2,784,744 + BWI76_RS13350 0.28 +0.4 2,784,904 - BWI76_RS13350 0.46 +1.3 2,784,978 + BWI76_RS13350 0.54 +2.5 2,785,265 + BWI76_RS13350 0.86 +0.7 2,785,383 - -1.1 2,785,441 - -0.2 2,785,441 - -2.3 2,785,533 - -0.4 2,785,544 + -1.8 2,785,828 + BWI76_RS13355 0.29 +2.4 2,785,912 - BWI76_RS13355 0.39 +0.6 2,786,127 - BWI76_RS13355 0.63 +0.5 2,786,288 - BWI76_RS13355 0.82 -0.4
Or see this region's nucleotide sequence