Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS11275

Experiment: Dictyostellum sp.mixed culture-2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS11270 and BWI76_RS11275 are separated by 86 nucleotidesBWI76_RS11275 and BWI76_RS11280 overlap by 4 nucleotidesBWI76_RS11280 and BWI76_RS11285 are separated by 84 nucleotides BWI76_RS11270: BWI76_RS11270 - 50S ribosomal protein L16 arginine hydroxylase, at 2,376,613 to 2,377,734 _RS11270 BWI76_RS11275: BWI76_RS11275 - sensor protein PhoQ, at 2,377,821 to 2,379,287 _RS11275 BWI76_RS11280: BWI76_RS11280 - two-component system response regulator PhoP, at 2,379,284 to 2,379,958 _RS11280 BWI76_RS11285: BWI76_RS11285 - transcriptional regulator, at 2,380,043 to 2,380,489 _RS11285 Position (kb) 2377 2378 2379 2380Strain fitness (log2 ratio) -3 -2 -1 0 1at 2377.628 kb on - strandat 2377.827 kb on - strandat 2377.948 kb on + strandat 2378.339 kb on + strand, within BWI76_RS11275at 2378.608 kb on + strand, within BWI76_RS11275at 2378.608 kb on + strand, within BWI76_RS11275at 2378.759 kb on - strand, within BWI76_RS11275at 2378.772 kb on - strand, within BWI76_RS11275at 2378.907 kb on + strand, within BWI76_RS11275at 2379.027 kb on - strand, within BWI76_RS11275at 2379.106 kb on + strand, within BWI76_RS11275at 2379.930 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Dictyostellum sp.mixed culture-2
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2,377,628 - -1.0
2,377,827 - -1.6
2,377,948 + -2.5
2,378,339 + BWI76_RS11275 0.35 -2.8
2,378,608 + BWI76_RS11275 0.54 -1.0
2,378,608 + BWI76_RS11275 0.54 -1.9
2,378,759 - BWI76_RS11275 0.64 -2.5
2,378,772 - BWI76_RS11275 0.65 -0.7
2,378,907 + BWI76_RS11275 0.74 -2.9
2,379,027 - BWI76_RS11275 0.82 -3.0
2,379,106 + BWI76_RS11275 0.88 -2.1
2,379,930 + -0.9

Or see this region's nucleotide sequence