Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS10330

Experiment: Dictyostellum sp.mixed culture-2

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntBWI76_RS10325 and BWI76_RS10330 are separated by 186 nucleotidesBWI76_RS10330 and BWI76_RS10335 are separated by 148 nucleotides BWI76_RS10325: BWI76_RS10325 - AraC family transcriptional regulator, at 2,186,453 to 2,187,292 _RS10325 BWI76_RS10330: BWI76_RS10330 - TetR family transcriptional regulator, at 2,187,479 to 2,188,093 _RS10330 BWI76_RS10335: BWI76_RS10335 - tyrosine permease, at 2,188,242 to 2,189,405 _RS10335 Position (kb) 2187 2188 2189Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 2186.647 kb on - strand, within BWI76_RS10325at 2186.723 kb on - strand, within BWI76_RS10325at 2186.939 kb on - strand, within BWI76_RS10325at 2186.960 kb on - strand, within BWI76_RS10325at 2187.013 kb on - strand, within BWI76_RS10325at 2187.013 kb on - strand, within BWI76_RS10325at 2187.042 kb on - strand, within BWI76_RS10325at 2187.067 kb on + strand, within BWI76_RS10325at 2187.067 kb on + strand, within BWI76_RS10325at 2187.075 kb on + strand, within BWI76_RS10325at 2187.090 kb on - strand, within BWI76_RS10325at 2187.131 kb on - strand, within BWI76_RS10325at 2187.187 kb on - strand, within BWI76_RS10325at 2187.187 kb on - strand, within BWI76_RS10325at 2187.242 kb on - strandat 2187.305 kb on + strandat 2187.337 kb on + strandat 2187.348 kb on + strandat 2187.464 kb on + strandat 2187.470 kb on + strandat 2187.514 kb on - strandat 2187.691 kb on + strand, within BWI76_RS10330at 2187.781 kb on + strand, within BWI76_RS10330at 2187.815 kb on + strand, within BWI76_RS10330at 2188.000 kb on + strand, within BWI76_RS10330at 2188.079 kb on + strandat 2188.142 kb on + strandat 2188.142 kb on + strandat 2188.142 kb on + strandat 2188.142 kb on + strandat 2188.142 kb on + strandat 2188.142 kb on + strandat 2188.150 kb on - strandat 2188.150 kb on - strandat 2188.150 kb on - strandat 2188.150 kb on - strandat 2188.150 kb on - strandat 2188.234 kb on + strandat 2188.242 kb on - strandat 2188.270 kb on + strandat 2188.270 kb on + strandat 2188.273 kb on - strandat 2188.275 kb on + strandat 2188.278 kb on - strandat 2188.278 kb on - strandat 2188.278 kb on - strandat 2188.283 kb on - strandat 2188.356 kb on + strandat 2188.368 kb on - strand, within BWI76_RS10335at 2188.395 kb on - strand, within BWI76_RS10335at 2188.417 kb on + strand, within BWI76_RS10335at 2188.417 kb on + strand, within BWI76_RS10335at 2188.422 kb on + strand, within BWI76_RS10335at 2188.422 kb on + strand, within BWI76_RS10335at 2188.425 kb on - strand, within BWI76_RS10335at 2188.430 kb on - strand, within BWI76_RS10335at 2188.430 kb on - strand, within BWI76_RS10335at 2188.430 kb on - strand, within BWI76_RS10335at 2188.461 kb on + strand, within BWI76_RS10335at 2188.461 kb on + strand, within BWI76_RS10335at 2188.469 kb on - strand, within BWI76_RS10335at 2188.500 kb on - strand, within BWI76_RS10335at 2188.522 kb on + strand, within BWI76_RS10335at 2188.530 kb on + strand, within BWI76_RS10335at 2188.532 kb on + strand, within BWI76_RS10335at 2188.539 kb on - strand, within BWI76_RS10335at 2188.572 kb on + strand, within BWI76_RS10335at 2188.598 kb on + strand, within BWI76_RS10335at 2188.598 kb on + strand, within BWI76_RS10335at 2188.598 kb on + strand, within BWI76_RS10335at 2188.598 kb on + strand, within BWI76_RS10335at 2188.598 kb on + strand, within BWI76_RS10335at 2188.598 kb on + strand, within BWI76_RS10335at 2188.598 kb on + strand, within BWI76_RS10335at 2188.606 kb on - strand, within BWI76_RS10335at 2188.606 kb on - strand, within BWI76_RS10335at 2188.616 kb on + strand, within BWI76_RS10335at 2188.616 kb on - strand, within BWI76_RS10335at 2188.616 kb on - strand, within BWI76_RS10335at 2188.621 kb on - strand, within BWI76_RS10335at 2188.711 kb on + strand, within BWI76_RS10335at 2188.723 kb on + strand, within BWI76_RS10335at 2188.723 kb on + strand, within BWI76_RS10335at 2188.733 kb on + strand, within BWI76_RS10335at 2188.897 kb on - strand, within BWI76_RS10335at 2188.937 kb on + strand, within BWI76_RS10335at 2188.937 kb on + strand, within BWI76_RS10335at 2188.945 kb on - strand, within BWI76_RS10335at 2189.017 kb on - strand, within BWI76_RS10335at 2189.091 kb on + strand, within BWI76_RS10335

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Dictyostellum sp.mixed culture-2
remove
2,186,647 - BWI76_RS10325 0.23 +0.4
2,186,723 - BWI76_RS10325 0.32 +1.3
2,186,939 - BWI76_RS10325 0.58 -0.7
2,186,960 - BWI76_RS10325 0.60 +1.6
2,187,013 - BWI76_RS10325 0.67 -1.0
2,187,013 - BWI76_RS10325 0.67 -0.2
2,187,042 - BWI76_RS10325 0.70 -0.1
2,187,067 + BWI76_RS10325 0.73 +0.1
2,187,067 + BWI76_RS10325 0.73 +2.0
2,187,075 + BWI76_RS10325 0.74 +0.4
2,187,090 - BWI76_RS10325 0.76 +0.7
2,187,131 - BWI76_RS10325 0.81 -0.0
2,187,187 - BWI76_RS10325 0.87 -0.4
2,187,187 - BWI76_RS10325 0.87 -1.4
2,187,242 - +2.6
2,187,305 + +0.1
2,187,337 + +0.2
2,187,348 + +2.2
2,187,464 + -0.7
2,187,470 + -0.7
2,187,514 - -0.9
2,187,691 + BWI76_RS10330 0.34 +0.1
2,187,781 + BWI76_RS10330 0.49 -1.0
2,187,815 + BWI76_RS10330 0.55 -1.0
2,188,000 + BWI76_RS10330 0.85 -2.9
2,188,079 + -0.3
2,188,142 + +0.7
2,188,142 + -1.3
2,188,142 + -1.5
2,188,142 + +0.4
2,188,142 + +0.5
2,188,142 + -0.5
2,188,150 - +1.1
2,188,150 - +0.2
2,188,150 - +1.2
2,188,150 - -0.8
2,188,150 - +0.0
2,188,234 + -0.7
2,188,242 - -0.2
2,188,270 + +0.0
2,188,270 + -0.8
2,188,273 - +0.1
2,188,275 + +0.6
2,188,278 - +2.3
2,188,278 - +0.0
2,188,278 - -0.4
2,188,283 - +1.2
2,188,356 + -0.8
2,188,368 - BWI76_RS10335 0.11 +0.2
2,188,395 - BWI76_RS10335 0.13 -2.0
2,188,417 + BWI76_RS10335 0.15 -0.2
2,188,417 + BWI76_RS10335 0.15 +0.8
2,188,422 + BWI76_RS10335 0.15 +0.8
2,188,422 + BWI76_RS10335 0.15 -0.9
2,188,425 - BWI76_RS10335 0.16 -1.1
2,188,430 - BWI76_RS10335 0.16 +0.8
2,188,430 - BWI76_RS10335 0.16 -0.9
2,188,430 - BWI76_RS10335 0.16 +0.7
2,188,461 + BWI76_RS10335 0.19 -0.6
2,188,461 + BWI76_RS10335 0.19 +1.7
2,188,469 - BWI76_RS10335 0.20 -0.5
2,188,500 - BWI76_RS10335 0.22 +1.2
2,188,522 + BWI76_RS10335 0.24 +0.8
2,188,530 + BWI76_RS10335 0.25 -0.7
2,188,532 + BWI76_RS10335 0.25 -2.0
2,188,539 - BWI76_RS10335 0.26 +0.0
2,188,572 + BWI76_RS10335 0.28 +1.2
2,188,598 + BWI76_RS10335 0.31 -1.4
2,188,598 + BWI76_RS10335 0.31 +0.3
2,188,598 + BWI76_RS10335 0.31 +0.5
2,188,598 + BWI76_RS10335 0.31 -0.9
2,188,598 + BWI76_RS10335 0.31 -0.7
2,188,598 + BWI76_RS10335 0.31 -1.1
2,188,598 + BWI76_RS10335 0.31 -2.1
2,188,606 - BWI76_RS10335 0.31 -0.1
2,188,606 - BWI76_RS10335 0.31 -1.0
2,188,616 + BWI76_RS10335 0.32 +0.3
2,188,616 - BWI76_RS10335 0.32 +0.5
2,188,616 - BWI76_RS10335 0.32 +0.6
2,188,621 - BWI76_RS10335 0.33 -1.4
2,188,711 + BWI76_RS10335 0.40 +0.3
2,188,723 + BWI76_RS10335 0.41 +0.2
2,188,723 + BWI76_RS10335 0.41 -0.9
2,188,733 + BWI76_RS10335 0.42 -0.8
2,188,897 - BWI76_RS10335 0.56 +0.2
2,188,937 + BWI76_RS10335 0.60 -0.1
2,188,937 + BWI76_RS10335 0.60 +0.6
2,188,945 - BWI76_RS10335 0.60 -2.2
2,189,017 - BWI76_RS10335 0.67 -1.4
2,189,091 + BWI76_RS10335 0.73 -0.4

Or see this region's nucleotide sequence