Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS08920

Experiment: Dictyostellum sp.mixed culture-2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS08915 and BWI76_RS08920 are separated by 202 nucleotidesBWI76_RS08920 and BWI76_RS08925 are separated by 42 nucleotides BWI76_RS08915: BWI76_RS08915 - ATP-dependent RNA helicase RhlE, at 1,876,921 to 1,878,273 _RS08915 BWI76_RS08920: BWI76_RS08920 - ATP-dependent DNA helicase DinG, at 1,878,476 to 1,880,620 _RS08920 BWI76_RS08925: BWI76_RS08925 - DNA-binding protein YbiB, at 1,880,663 to 1,881,631 _RS08925 Position (kb) 1878 1879 1880 1881Strain fitness (log2 ratio) -2 -1 0 1 2at 1877.478 kb on + strand, within BWI76_RS08915at 1877.556 kb on + strand, within BWI76_RS08915at 1877.564 kb on - strand, within BWI76_RS08915at 1878.281 kb on - strandat 1878.315 kb on + strandat 1878.794 kb on - strand, within BWI76_RS08920at 1878.794 kb on - strand, within BWI76_RS08920at 1878.970 kb on + strandat 1879.369 kb on + strand, within BWI76_RS08920at 1879.417 kb on + strand, within BWI76_RS08920at 1879.455 kb on - strand, within BWI76_RS08920at 1879.779 kb on + strand, within BWI76_RS08920at 1879.804 kb on + strand, within BWI76_RS08920at 1880.646 kb on + strandat 1880.773 kb on + strand, within BWI76_RS08925at 1880.799 kb on + strand, within BWI76_RS08925at 1881.086 kb on + strand, within BWI76_RS08925at 1881.201 kb on - strand, within BWI76_RS08925at 1881.368 kb on + strand, within BWI76_RS08925at 1881.510 kb on + strand, within BWI76_RS08925

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Per-strain Table

Position Strand Gene LocusTag Fraction Dictyostellum sp.mixed culture-2
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1,877,478 + BWI76_RS08915 0.41 +0.8
1,877,556 + BWI76_RS08915 0.47 +0.1
1,877,564 - BWI76_RS08915 0.48 +0.4
1,878,281 - +0.5
1,878,315 + +2.2
1,878,794 - BWI76_RS08920 0.15 +1.1
1,878,794 - BWI76_RS08920 0.15 +1.2
1,878,970 + -0.4
1,879,369 + BWI76_RS08920 0.42 +0.2
1,879,417 + BWI76_RS08920 0.44 -0.7
1,879,455 - BWI76_RS08920 0.46 +2.4
1,879,779 + BWI76_RS08920 0.61 -0.2
1,879,804 + BWI76_RS08920 0.62 +1.8
1,880,646 + +1.4
1,880,773 + BWI76_RS08925 0.11 -0.3
1,880,799 + BWI76_RS08925 0.14 +0.9
1,881,086 + BWI76_RS08925 0.44 -0.9
1,881,201 - BWI76_RS08925 0.56 -0.6
1,881,368 + BWI76_RS08925 0.73 -2.0
1,881,510 + BWI76_RS08925 0.87 -0.3

Or see this region's nucleotide sequence