Experiment: Dictyostellum sp.mixed culture-2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS08320 and BWI76_RS08325 overlap by 1 nucleotides BWI76_RS08325 and BWI76_RS08330 are separated by 309 nucleotides BWI76_RS08330 and BWI76_RS08335 are separated by 202 nucleotides BWI76_RS08335 and BWI76_RS08340 overlap by 32 nucleotides
BWI76_RS08320: BWI76_RS08320 - potassium-transporting ATPase subunit KdpA, at 1,761,664 to 1,763,343
_RS08320
BWI76_RS08325: BWI76_RS08325 - potassium-transporting ATPase subunit F, at 1,763,343 to 1,763,432
_RS08325
BWI76_RS08330: BWI76_RS08330 - hypothetical protein, at 1,763,742 to 1,763,948
_RS08330
BWI76_RS08335: BWI76_RS08335 - deoxyribodipyrimidine photo-lyase, at 1,764,151 to 1,765,593
_RS08335
BWI76_RS08340: BWI76_RS08340 - MFS transporter, at 1,765,562 to 1,767,043
_RS08340
Position (kb)
1764
1765
1766 Strain fitness (log2 ratio)
-2
-1
0
1 at 1763.466 kb on + strand at 1763.674 kb on + strand at 1763.674 kb on + strand at 1763.903 kb on + strand, within BWI76_RS08330 at 1763.968 kb on + strand at 1763.984 kb on - strand at 1764.068 kb on - strand at 1764.085 kb on + strand at 1764.091 kb on + strand at 1764.093 kb on - strand at 1764.244 kb on - strand at 1764.305 kb on - strand, within BWI76_RS08335 at 1764.786 kb on - strand, within BWI76_RS08335 at 1765.149 kb on + strand, within BWI76_RS08335 at 1765.192 kb on + strand, within BWI76_RS08335 at 1765.595 kb on - strand at 1765.640 kb on + strand at 1765.672 kb on + strand at 1765.870 kb on + strand, within BWI76_RS08340 at 1765.895 kb on + strand, within BWI76_RS08340 at 1765.920 kb on - strand, within BWI76_RS08340 at 1765.996 kb on + strand, within BWI76_RS08340 at 1766.052 kb on + strand, within BWI76_RS08340 at 1766.129 kb on - strand, within BWI76_RS08340 at 1766.247 kb on + strand, within BWI76_RS08340 at 1766.278 kb on + strand, within BWI76_RS08340 at 1766.296 kb on - strand, within BWI76_RS08340 at 1766.369 kb on - strand, within BWI76_RS08340 at 1766.535 kb on - strand, within BWI76_RS08340 at 1766.554 kb on - strand, within BWI76_RS08340
Per-strain Table
Position Strand Gene LocusTag Fraction Dictyostellum sp.mixed culture-2 remove 1,763,466 + -0.2 1,763,674 + -0.9 1,763,674 + +1.3 1,763,903 + BWI76_RS08330 0.78 +1.1 1,763,968 + +1.0 1,763,984 - +0.1 1,764,068 - +1.0 1,764,085 + -0.1 1,764,091 + -0.4 1,764,093 - +0.8 1,764,244 - +0.4 1,764,305 - BWI76_RS08335 0.11 +1.5 1,764,786 - BWI76_RS08335 0.44 +0.6 1,765,149 + BWI76_RS08335 0.69 -0.1 1,765,192 + BWI76_RS08335 0.72 +1.5 1,765,595 - -0.5 1,765,640 + -0.2 1,765,672 + -0.2 1,765,870 + BWI76_RS08340 0.21 -0.4 1,765,895 + BWI76_RS08340 0.22 +1.6 1,765,920 - BWI76_RS08340 0.24 -0.4 1,765,996 + BWI76_RS08340 0.29 -2.5 1,766,052 + BWI76_RS08340 0.33 +0.5 1,766,129 - BWI76_RS08340 0.38 -0.7 1,766,247 + BWI76_RS08340 0.46 -0.1 1,766,278 + BWI76_RS08340 0.48 +0.7 1,766,296 - BWI76_RS08340 0.50 -0.2 1,766,369 - BWI76_RS08340 0.54 -0.2 1,766,535 - BWI76_RS08340 0.66 -0.2 1,766,554 - BWI76_RS08340 0.67 -0.8
Or see this region's nucleotide sequence