Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS05650

Experiment: Dictyostellum sp.mixed culture-2

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntBWI76_RS05645 and BWI76_RS05650 are separated by 76 nucleotidesBWI76_RS05650 and BWI76_RS05655 are separated by 583 nucleotidesBWI76_RS05655 and BWI76_RS05660 are separated by 10 nucleotides BWI76_RS05645: BWI76_RS05645 - fructuronate reductase, at 1,184,843 to 1,186,318 _RS05645 BWI76_RS05650: BWI76_RS05650 - mannonate dehydratase, at 1,186,395 to 1,187,579 _RS05650 BWI76_RS05655: BWI76_RS05655 - hypothetical protein, at 1,188,163 to 1,188,420 _RS05655 BWI76_RS05660: BWI76_RS05660 - N-acetyltransferase, at 1,188,431 to 1,188,982 _RS05660 Position (kb) 1186 1187 1188Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1185.719 kb on - strand, within BWI76_RS05645at 1185.821 kb on + strand, within BWI76_RS05645at 1185.829 kb on - strand, within BWI76_RS05645at 1186.333 kb on - strandat 1186.673 kb on + strand, within BWI76_RS05650at 1186.681 kb on - strand, within BWI76_RS05650at 1186.691 kb on - strand, within BWI76_RS05650at 1186.701 kb on - strand, within BWI76_RS05650at 1186.772 kb on + strand, within BWI76_RS05650at 1187.019 kb on + strand, within BWI76_RS05650at 1187.022 kb on - strand, within BWI76_RS05650at 1187.044 kb on + strand, within BWI76_RS05650at 1187.168 kb on + strand, within BWI76_RS05650at 1187.204 kb on + strand, within BWI76_RS05650at 1187.214 kb on - strand, within BWI76_RS05650at 1187.290 kb on + strand, within BWI76_RS05650at 1187.304 kb on - strand, within BWI76_RS05650at 1187.362 kb on + strand, within BWI76_RS05650at 1187.370 kb on - strand, within BWI76_RS05650at 1187.552 kb on + strandat 1187.560 kb on - strandat 1187.606 kb on + strandat 1187.669 kb on - strandat 1187.778 kb on - strandat 1187.824 kb on + strandat 1187.837 kb on + strandat 1187.837 kb on + strandat 1187.845 kb on - strandat 1187.845 kb on - strandat 1187.845 kb on - strandat 1187.845 kb on - strandat 1188.010 kb on + strandat 1188.204 kb on + strand, within BWI76_RS05655at 1188.368 kb on - strand, within BWI76_RS05655at 1188.377 kb on - strand, within BWI76_RS05655at 1188.494 kb on + strand, within BWI76_RS05660at 1188.494 kb on + strand, within BWI76_RS05660

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Dictyostellum sp.mixed culture-2
remove
1,185,719 - BWI76_RS05645 0.59 -0.2
1,185,821 + BWI76_RS05645 0.66 +0.1
1,185,829 - BWI76_RS05645 0.67 +1.9
1,186,333 - -0.9
1,186,673 + BWI76_RS05650 0.23 +0.4
1,186,681 - BWI76_RS05650 0.24 -0.3
1,186,691 - BWI76_RS05650 0.25 -0.2
1,186,701 - BWI76_RS05650 0.26 -0.7
1,186,772 + BWI76_RS05650 0.32 +0.3
1,187,019 + BWI76_RS05650 0.53 +0.2
1,187,022 - BWI76_RS05650 0.53 +1.6
1,187,044 + BWI76_RS05650 0.55 +1.1
1,187,168 + BWI76_RS05650 0.65 +0.3
1,187,204 + BWI76_RS05650 0.68 -0.9
1,187,214 - BWI76_RS05650 0.69 +0.9
1,187,290 + BWI76_RS05650 0.76 -1.2
1,187,304 - BWI76_RS05650 0.77 -0.9
1,187,362 + BWI76_RS05650 0.82 -0.2
1,187,370 - BWI76_RS05650 0.82 +0.8
1,187,552 + -0.0
1,187,560 - +0.6
1,187,606 + -1.9
1,187,669 - +0.8
1,187,778 - -3.1
1,187,824 + +0.8
1,187,837 + +1.1
1,187,837 + +1.0
1,187,845 - +0.6
1,187,845 - -0.2
1,187,845 - +0.0
1,187,845 - -0.9
1,188,010 + -0.0
1,188,204 + BWI76_RS05655 0.16 -2.6
1,188,368 - BWI76_RS05655 0.79 +0.3
1,188,377 - BWI76_RS05655 0.83 -1.1
1,188,494 + BWI76_RS05660 0.11 -0.7
1,188,494 + BWI76_RS05660 0.11 +0.4

Or see this region's nucleotide sequence