Experiment: Dictyostellum sp.mixed culture-2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS05500 and BWI76_RS05505 overlap by 8 nucleotides BWI76_RS05505 and BWI76_RS05510 are separated by 6 nucleotides BWI76_RS05510 and BWI76_RS05515 are separated by 11 nucleotides
BWI76_RS05500: BWI76_RS05500 - NADH:ubiquinone reductase (Na(+)-transporting) subunit C, at 1,154,412 to 1,155,206
_RS05500
BWI76_RS05505: BWI76_RS05505 - NADH:ubiquinone reductase (Na(+)-transporting) subunit D, at 1,155,199 to 1,155,837
_RS05505
BWI76_RS05510: BWI76_RS05510 - NADH:ubiquinone reductase (Na(+)-transporting) subunit E, at 1,155,844 to 1,156,440
_RS05510
BWI76_RS05515: BWI76_RS05515 - NADH:ubiquinone reductase (Na(+)-transporting) subunit F, at 1,156,452 to 1,157,675
_RS05515
Position (kb)
1155
1156
1157 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 1154.954 kb on + strand, within BWI76_RS05500 at 1155.068 kb on + strand, within BWI76_RS05500 at 1155.074 kb on - strand, within BWI76_RS05500 at 1155.089 kb on + strand, within BWI76_RS05500 at 1155.862 kb on - strand at 1156.033 kb on - strand, within BWI76_RS05510 at 1156.158 kb on + strand, within BWI76_RS05510 at 1156.158 kb on + strand, within BWI76_RS05510 at 1156.166 kb on - strand, within BWI76_RS05510 at 1156.375 kb on - strand, within BWI76_RS05510 at 1156.375 kb on - strand, within BWI76_RS05510 at 1156.511 kb on + strand at 1156.733 kb on + strand, within BWI76_RS05515 at 1156.858 kb on - strand, within BWI76_RS05515 at 1157.126 kb on - strand, within BWI76_RS05515 at 1157.340 kb on + strand, within BWI76_RS05515
Per-strain Table
Position Strand Gene LocusTag Fraction Dictyostellum sp.mixed culture-2 remove 1,154,954 + BWI76_RS05500 0.68 -0.8 1,155,068 + BWI76_RS05500 0.83 +0.3 1,155,074 - BWI76_RS05500 0.83 +0.4 1,155,089 + BWI76_RS05500 0.85 -0.9 1,155,862 - +0.7 1,156,033 - BWI76_RS05510 0.32 -1.4 1,156,158 + BWI76_RS05510 0.53 -1.5 1,156,158 + BWI76_RS05510 0.53 -0.5 1,156,166 - BWI76_RS05510 0.54 +0.1 1,156,375 - BWI76_RS05510 0.89 -0.4 1,156,375 - BWI76_RS05510 0.89 -3.6 1,156,511 + -0.7 1,156,733 + BWI76_RS05515 0.23 -0.0 1,156,858 - BWI76_RS05515 0.33 -2.2 1,157,126 - BWI76_RS05515 0.55 -1.4 1,157,340 + BWI76_RS05515 0.73 +0.8
Or see this region's nucleotide sequence