Experiment: Dictyostellum sp.mixed culture-2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS03940 and BWI76_RS03945 are separated by 11 nucleotides BWI76_RS03945 and BWI76_RS03950 are separated by 136 nucleotides
BWI76_RS03940: BWI76_RS03940 - alcohol dehydrogenase, at 814,109 to 815,131
_RS03940
BWI76_RS03945: BWI76_RS03945 - altronate oxidoreductase, at 815,143 to 816,588
_RS03945
BWI76_RS03950: BWI76_RS03950 - sigma-54 interacting domain-containing protein, at 816,725 to 819,490
_RS03950
Position (kb) 815
816
817 Strain fitness (log2 ratio) -2
-1
0
1
2 at 814.243 kb on + strand, within BWI76_RS03940 at 814.245 kb on + strand, within BWI76_RS03940 at 814.265 kb on + strand, within BWI76_RS03940 at 814.308 kb on + strand, within BWI76_RS03940 at 814.356 kb on + strand, within BWI76_RS03940 at 814.361 kb on + strand, within BWI76_RS03940 at 814.369 kb on - strand at 814.391 kb on + strand, within BWI76_RS03940 at 814.391 kb on + strand, within BWI76_RS03940 at 814.391 kb on + strand, within BWI76_RS03940 at 814.392 kb on - strand, within BWI76_RS03940 at 814.398 kb on - strand, within BWI76_RS03940 at 814.399 kb on - strand, within BWI76_RS03940 at 814.399 kb on - strand, within BWI76_RS03940 at 814.399 kb on - strand, within BWI76_RS03940 at 814.399 kb on - strand, within BWI76_RS03940 at 814.399 kb on - strand, within BWI76_RS03940 at 814.399 kb on - strand, within BWI76_RS03940 at 814.401 kb on + strand, within BWI76_RS03940 at 814.409 kb on - strand, within BWI76_RS03940 at 814.472 kb on - strand, within BWI76_RS03940 at 814.540 kb on + strand, within BWI76_RS03940 at 814.549 kb on - strand, within BWI76_RS03940 at 814.630 kb on - strand, within BWI76_RS03940 at 814.640 kb on - strand, within BWI76_RS03940 at 814.692 kb on + strand, within BWI76_RS03940 at 814.700 kb on - strand, within BWI76_RS03940 at 814.702 kb on + strand, within BWI76_RS03940 at 814.737 kb on + strand, within BWI76_RS03940 at 814.745 kb on - strand, within BWI76_RS03940 at 814.781 kb on + strand, within BWI76_RS03940 at 814.835 kb on + strand, within BWI76_RS03940 at 814.894 kb on + strand, within BWI76_RS03940 at 814.902 kb on - strand, within BWI76_RS03940 at 814.902 kb on - strand, within BWI76_RS03940 at 814.902 kb on - strand, within BWI76_RS03940 at 815.012 kb on + strand, within BWI76_RS03940 at 815.028 kb on + strand, within BWI76_RS03940 at 815.205 kb on - strand at 815.214 kb on - strand at 815.332 kb on + strand, within BWI76_RS03945 at 815.456 kb on + strand, within BWI76_RS03945 at 815.464 kb on - strand, within BWI76_RS03945 at 815.692 kb on + strand, within BWI76_RS03945 at 815.728 kb on + strand, within BWI76_RS03945 at 815.751 kb on - strand, within BWI76_RS03945 at 815.835 kb on + strand, within BWI76_RS03945 at 816.026 kb on - strand, within BWI76_RS03945 at 816.298 kb on - strand, within BWI76_RS03945 at 816.414 kb on - strand, within BWI76_RS03945 at 816.427 kb on + strand, within BWI76_RS03945 at 816.444 kb on + strand at 816.910 kb on + strand at 816.976 kb on - strand at 817.081 kb on + strand, within BWI76_RS03950 at 817.081 kb on + strand, within BWI76_RS03950 at 817.081 kb on + strand, within BWI76_RS03950 at 817.104 kb on - strand, within BWI76_RS03950 at 817.104 kb on - strand, within BWI76_RS03950 at 817.262 kb on - strand, within BWI76_RS03950 at 817.274 kb on + strand, within BWI76_RS03950 at 817.389 kb on + strand, within BWI76_RS03950 at 817.492 kb on - strand, within BWI76_RS03950
Per-strain Table
Position Strand Gene LocusTag Fraction Dictyostellum sp.mixed culture-2 remove 814,243 + BWI76_RS03940 0.13 +1.4 814,245 + BWI76_RS03940 0.13 -0.5 814,265 + BWI76_RS03940 0.15 -1.6 814,308 + BWI76_RS03940 0.19 -1.1 814,356 + BWI76_RS03940 0.24 -0.2 814,361 + BWI76_RS03940 0.25 -0.2 814,369 - +0.6 814,391 + BWI76_RS03940 0.28 +1.4 814,391 + BWI76_RS03940 0.28 -0.1 814,391 + BWI76_RS03940 0.28 -0.5 814,392 - BWI76_RS03940 0.28 -0.5 814,398 - BWI76_RS03940 0.28 +0.1 814,399 - BWI76_RS03940 0.28 +0.8 814,399 - BWI76_RS03940 0.28 -0.7 814,399 - BWI76_RS03940 0.28 -0.8 814,399 - BWI76_RS03940 0.28 -0.4 814,399 - BWI76_RS03940 0.28 -0.4 814,399 - BWI76_RS03940 0.28 -0.7 814,401 + BWI76_RS03940 0.29 +0.7 814,409 - BWI76_RS03940 0.29 +0.5 814,472 - BWI76_RS03940 0.35 +0.3 814,540 + BWI76_RS03940 0.42 +0.1 814,549 - BWI76_RS03940 0.43 -1.1 814,630 - BWI76_RS03940 0.51 +0.9 814,640 - BWI76_RS03940 0.52 +0.3 814,692 + BWI76_RS03940 0.57 -0.2 814,700 - BWI76_RS03940 0.58 +1.4 814,702 + BWI76_RS03940 0.58 -1.9 814,737 + BWI76_RS03940 0.61 +0.0 814,745 - BWI76_RS03940 0.62 -0.4 814,781 + BWI76_RS03940 0.66 -0.2 814,835 + BWI76_RS03940 0.71 +0.5 814,894 + BWI76_RS03940 0.77 -0.0 814,902 - BWI76_RS03940 0.78 +0.4 814,902 - BWI76_RS03940 0.78 +2.7 814,902 - BWI76_RS03940 0.78 -0.3 815,012 + BWI76_RS03940 0.88 +0.4 815,028 + BWI76_RS03940 0.90 -0.3 815,205 - +0.4 815,214 - +0.9 815,332 + BWI76_RS03945 0.13 -0.4 815,456 + BWI76_RS03945 0.22 -0.4 815,464 - BWI76_RS03945 0.22 +0.7 815,692 + BWI76_RS03945 0.38 +0.1 815,728 + BWI76_RS03945 0.40 +1.4 815,751 - BWI76_RS03945 0.42 +1.2 815,835 + BWI76_RS03945 0.48 +0.8 816,026 - BWI76_RS03945 0.61 +1.0 816,298 - BWI76_RS03945 0.80 +0.4 816,414 - BWI76_RS03945 0.88 +0.3 816,427 + BWI76_RS03945 0.89 -0.9 816,444 + -0.3 816,910 + +1.6 816,976 - -0.6 817,081 + BWI76_RS03950 0.13 -0.7 817,081 + BWI76_RS03950 0.13 -0.8 817,081 + BWI76_RS03950 0.13 -0.5 817,104 - BWI76_RS03950 0.14 +1.8 817,104 - BWI76_RS03950 0.14 -0.0 817,262 - BWI76_RS03950 0.19 +2.1 817,274 + BWI76_RS03950 0.20 +0.6 817,389 + BWI76_RS03950 0.24 +0.0 817,492 - BWI76_RS03950 0.28 +0.1
Or see this region's nucleotide sequence