Experiment: Dictyostellum sp.mixed culture-2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS02980 and BWI76_RS02985 are separated by 67 nucleotides BWI76_RS02985 and BWI76_RS02990 are separated by 112 nucleotides BWI76_RS02990 and BWI76_RS02995 are separated by 12 nucleotides
BWI76_RS02980: BWI76_RS02980 - type I magnesium transporting ATPase, at 610,237 to 612,945
_RS02980
BWI76_RS02985: BWI76_RS02985 - reactive intermediate/imine deaminase, at 613,013 to 613,399
_RS02985
BWI76_RS02990: BWI76_RS02990 - aspartate carbamoyltransferase regulatory subunit, at 613,512 to 613,973
_RS02990
BWI76_RS02995: BWI76_RS02995 - aspartate carbamoyltransferase, at 613,986 to 614,921
_RS02995
Position (kb) 613
614 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 612.313 kb on + strand, within BWI76_RS02980 at 612.451 kb on - strand, within BWI76_RS02980 at 612.502 kb on + strand, within BWI76_RS02980 at 613.314 kb on - strand, within BWI76_RS02985 at 613.348 kb on + strand, within BWI76_RS02985 at 613.349 kb on - strand, within BWI76_RS02985 at 613.552 kb on - strand at 613.889 kb on + strand, within BWI76_RS02990 at 613.889 kb on + strand, within BWI76_RS02990 at 613.889 kb on + strand, within BWI76_RS02990 at 613.917 kb on + strand, within BWI76_RS02990 at 613.941 kb on - strand at 614.067 kb on + strand at 614.248 kb on - strand, within BWI76_RS02995 at 614.303 kb on - strand, within BWI76_RS02995 at 614.318 kb on + strand, within BWI76_RS02995
Per-strain Table
Position Strand Gene LocusTag Fraction Dictyostellum sp.mixed culture-2 remove 612,313 + BWI76_RS02980 0.77 -0.4 612,451 - BWI76_RS02980 0.82 -1.0 612,502 + BWI76_RS02980 0.84 -1.3 613,314 - BWI76_RS02985 0.78 +0.3 613,348 + BWI76_RS02985 0.87 +2.1 613,349 - BWI76_RS02985 0.87 +0.0 613,552 - +0.1 613,889 + BWI76_RS02990 0.82 +0.3 613,889 + BWI76_RS02990 0.82 +1.3 613,889 + BWI76_RS02990 0.82 +1.5 613,917 + BWI76_RS02990 0.88 -0.8 613,941 - +0.3 614,067 + -2.5 614,248 - BWI76_RS02995 0.28 -4.5 614,303 - BWI76_RS02995 0.34 -2.6 614,318 + BWI76_RS02995 0.35 -3.8
Or see this region's nucleotide sequence