Experiment: Dictyostellum sp.mixed culture-2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS02640 and BWI76_RS02645 overlap by 1 nucleotides BWI76_RS02645 and BWI76_RS02650 are separated by 61 nucleotides BWI76_RS02650 and BWI76_RS02655 are separated by 138 nucleotides BWI76_RS02655 and BWI76_RS02660 are separated by 337 nucleotides
BWI76_RS02640: BWI76_RS02640 - xylulose 5-phosphate 3-epimerase, at 538,926 to 539,780
_RS02640
BWI76_RS02645: BWI76_RS02645 - L-ribulose-5-phosphate 4-epimerase, at 539,780 to 540,466
_RS02645
BWI76_RS02650: BWI76_RS02650 - MFS transporter, at 540,528 to 541,721
_RS02650
BWI76_RS02655: BWI76_RS02655 - hypothetical protein, at 541,860 to 542,135
_RS02655
BWI76_RS02660: BWI76_RS02660 - 30S ribosomal protein S6, at 542,473 to 542,868
_RS02660
Position (kb) 540
541
542 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 539.546 kb on - strand, within BWI76_RS02640 at 539.566 kb on + strand, within BWI76_RS02640 at 539.629 kb on + strand, within BWI76_RS02640 at 539.755 kb on + strand at 539.765 kb on + strand at 539.773 kb on - strand at 539.778 kb on - strand at 539.860 kb on + strand, within BWI76_RS02645 at 539.967 kb on + strand, within BWI76_RS02645 at 540.053 kb on + strand, within BWI76_RS02645 at 540.053 kb on + strand, within BWI76_RS02645 at 540.061 kb on - strand, within BWI76_RS02645 at 540.080 kb on + strand, within BWI76_RS02645 at 540.087 kb on - strand, within BWI76_RS02645 at 540.184 kb on + strand, within BWI76_RS02645 at 540.245 kb on - strand, within BWI76_RS02645 at 540.372 kb on + strand, within BWI76_RS02645 at 540.385 kb on + strand, within BWI76_RS02645 at 540.516 kb on - strand at 540.585 kb on + strand at 540.644 kb on + strand at 540.652 kb on - strand, within BWI76_RS02650 at 540.652 kb on - strand, within BWI76_RS02650 at 540.673 kb on - strand, within BWI76_RS02650 at 540.673 kb on - strand, within BWI76_RS02650 at 540.805 kb on + strand, within BWI76_RS02650 at 540.852 kb on - strand at 540.892 kb on - strand, within BWI76_RS02650 at 540.892 kb on - strand, within BWI76_RS02650 at 541.050 kb on + strand, within BWI76_RS02650 at 541.079 kb on + strand, within BWI76_RS02650 at 541.106 kb on - strand, within BWI76_RS02650 at 541.113 kb on - strand, within BWI76_RS02650 at 541.115 kb on + strand, within BWI76_RS02650 at 541.178 kb on + strand, within BWI76_RS02650 at 541.351 kb on - strand, within BWI76_RS02650 at 541.457 kb on + strand, within BWI76_RS02650 at 541.457 kb on + strand, within BWI76_RS02650 at 541.457 kb on + strand at 541.465 kb on - strand, within BWI76_RS02650 at 541.465 kb on - strand, within BWI76_RS02650 at 541.465 kb on - strand, within BWI76_RS02650 at 541.487 kb on - strand, within BWI76_RS02650 at 541.824 kb on + strand at 541.874 kb on - strand at 541.940 kb on - strand, within BWI76_RS02655 at 542.146 kb on + strand at 542.146 kb on + strand at 542.146 kb on + strand at 542.146 kb on + strand at 542.154 kb on - strand at 542.154 kb on - strand at 542.154 kb on - strand at 542.154 kb on - strand at 542.164 kb on - strand at 542.193 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Dictyostellum sp.mixed culture-2 remove 539,546 - BWI76_RS02640 0.73 +0.5 539,566 + BWI76_RS02640 0.75 -0.2 539,629 + BWI76_RS02640 0.82 +0.4 539,755 + +1.9 539,765 + +0.5 539,773 - -0.2 539,778 - +2.3 539,860 + BWI76_RS02645 0.12 -0.4 539,967 + BWI76_RS02645 0.27 +0.8 540,053 + BWI76_RS02645 0.40 -0.3 540,053 + BWI76_RS02645 0.40 +0.0 540,061 - BWI76_RS02645 0.41 +0.3 540,080 + BWI76_RS02645 0.44 -0.8 540,087 - BWI76_RS02645 0.45 -0.4 540,184 + BWI76_RS02645 0.59 -0.0 540,245 - BWI76_RS02645 0.68 -1.8 540,372 + BWI76_RS02645 0.86 -0.6 540,385 + BWI76_RS02645 0.88 -0.7 540,516 - +0.3 540,585 + -0.1 540,644 + +0.9 540,652 - BWI76_RS02650 0.10 +3.6 540,652 - BWI76_RS02650 0.10 +0.8 540,673 - BWI76_RS02650 0.12 +0.1 540,673 - BWI76_RS02650 0.12 +0.3 540,805 + BWI76_RS02650 0.23 -0.8 540,852 - -1.3 540,892 - BWI76_RS02650 0.30 +0.7 540,892 - BWI76_RS02650 0.30 +0.3 541,050 + BWI76_RS02650 0.44 +0.7 541,079 + BWI76_RS02650 0.46 +1.0 541,106 - BWI76_RS02650 0.48 +2.2 541,113 - BWI76_RS02650 0.49 -1.3 541,115 + BWI76_RS02650 0.49 -0.1 541,178 + BWI76_RS02650 0.54 -0.7 541,351 - BWI76_RS02650 0.69 -0.6 541,457 + BWI76_RS02650 0.78 -0.9 541,457 + BWI76_RS02650 0.78 +1.2 541,457 + -1.3 541,465 - BWI76_RS02650 0.78 +0.2 541,465 - BWI76_RS02650 0.78 +0.2 541,465 - BWI76_RS02650 0.78 +1.7 541,487 - BWI76_RS02650 0.80 -1.0 541,824 + -0.5 541,874 - -1.3 541,940 - BWI76_RS02655 0.29 +0.9 542,146 + +0.2 542,146 + -0.7 542,146 + -0.4 542,146 + -2.1 542,154 - +0.0 542,154 - -1.2 542,154 - +0.7 542,154 - -1.5 542,164 - -0.1 542,193 + -1.5
Or see this region's nucleotide sequence