Experiment: Dictyostellum sp.mixed culture-2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS02225 and BWI76_RS02230 are separated by 0 nucleotides BWI76_RS02230 and BWI76_RS02235 are separated by 204 nucleotides BWI76_RS02235 and BWI76_RS02240 are separated by 160 nucleotides BWI76_RS02240 and BWI76_RS02245 overlap by 6 nucleotides
BWI76_RS02225: BWI76_RS02225 - phosphonate C-P lyase system protein PhnG, at 460,002 to 460,454
_RS02225
BWI76_RS02230: BWI76_RS02230 - phosphonate metabolism transcriptional regulator PhnF, at 460,455 to 461,180
_RS02230
BWI76_RS02235: BWI76_RS02235 - VOC family protein, at 461,385 to 461,819
_RS02235
BWI76_RS02240: BWI76_RS02240 - alkylphosphonate utilization operon protein PhnA, at 461,980 to 462,315
_RS02240
BWI76_RS02245: BWI76_RS02245 - hypothetical protein, at 462,310 to 462,525
_RS02245
Position (kb) 461
462 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 460.546 kb on - strand, within BWI76_RS02230 at 460.654 kb on - strand, within BWI76_RS02230 at 460.691 kb on + strand, within BWI76_RS02230 at 460.718 kb on + strand, within BWI76_RS02230 at 460.744 kb on + strand, within BWI76_RS02230 at 460.750 kb on - strand, within BWI76_RS02230 at 460.752 kb on - strand, within BWI76_RS02230 at 460.762 kb on - strand, within BWI76_RS02230 at 460.821 kb on + strand, within BWI76_RS02230 at 460.890 kb on - strand, within BWI76_RS02230 at 461.027 kb on + strand, within BWI76_RS02230 at 461.027 kb on + strand, within BWI76_RS02230 at 461.035 kb on - strand, within BWI76_RS02230 at 461.035 kb on - strand, within BWI76_RS02230 at 461.196 kb on + strand at 461.409 kb on - strand at 461.556 kb on + strand, within BWI76_RS02235 at 461.634 kb on + strand, within BWI76_RS02235 at 461.664 kb on - strand, within BWI76_RS02235 at 461.738 kb on + strand, within BWI76_RS02235 at 461.738 kb on + strand, within BWI76_RS02235 at 461.738 kb on + strand, within BWI76_RS02235 at 461.746 kb on - strand, within BWI76_RS02235 at 461.746 kb on - strand, within BWI76_RS02235 at 461.746 kb on - strand, within BWI76_RS02235 at 461.746 kb on - strand, within BWI76_RS02235 at 461.751 kb on - strand, within BWI76_RS02235 at 461.774 kb on + strand, within BWI76_RS02235 at 461.777 kb on - strand at 461.800 kb on + strand at 461.809 kb on + strand at 461.815 kb on + strand at 461.824 kb on - strand at 461.828 kb on - strand at 461.830 kb on - strand at 461.830 kb on - strand at 461.830 kb on - strand at 461.830 kb on - strand at 461.853 kb on + strand at 461.853 kb on + strand at 461.853 kb on + strand at 461.854 kb on - strand at 461.861 kb on - strand at 461.861 kb on - strand at 461.895 kb on + strand at 461.895 kb on + strand at 461.900 kb on + strand at 461.901 kb on - strand at 461.908 kb on - strand at 461.914 kb on + strand at 461.919 kb on + strand at 461.919 kb on + strand at 461.921 kb on + strand at 461.921 kb on + strand at 461.927 kb on - strand at 462.021 kb on - strand, within BWI76_RS02240 at 462.040 kb on - strand, within BWI76_RS02240 at 462.055 kb on + strand at 462.056 kb on + strand, within BWI76_RS02240 at 462.064 kb on - strand, within BWI76_RS02240 at 462.064 kb on - strand, within BWI76_RS02240 at 462.064 kb on - strand, within BWI76_RS02240 at 462.064 kb on - strand, within BWI76_RS02240 at 462.064 kb on - strand, within BWI76_RS02240 at 462.064 kb on - strand, within BWI76_RS02240 at 462.064 kb on - strand, within BWI76_RS02240 at 462.073 kb on + strand, within BWI76_RS02240 at 462.102 kb on + strand, within BWI76_RS02240 at 462.112 kb on + strand, within BWI76_RS02240 at 462.112 kb on + strand, within BWI76_RS02240 at 462.113 kb on + strand, within BWI76_RS02240 at 462.120 kb on - strand, within BWI76_RS02240 at 462.120 kb on - strand, within BWI76_RS02240 at 462.120 kb on - strand, within BWI76_RS02240 at 462.121 kb on - strand, within BWI76_RS02240 at 462.121 kb on - strand, within BWI76_RS02240 at 462.144 kb on + strand, within BWI76_RS02240 at 462.202 kb on + strand, within BWI76_RS02240 at 462.204 kb on + strand, within BWI76_RS02240 at 462.205 kb on + strand, within BWI76_RS02240 at 462.212 kb on + strand, within BWI76_RS02240 at 462.213 kb on + strand, within BWI76_RS02240 at 462.218 kb on + strand, within BWI76_RS02240 at 462.220 kb on - strand, within BWI76_RS02240 at 462.221 kb on - strand, within BWI76_RS02240 at 462.223 kb on + strand, within BWI76_RS02240 at 462.226 kb on - strand, within BWI76_RS02240 at 462.226 kb on - strand at 462.228 kb on + strand, within BWI76_RS02240 at 462.260 kb on - strand, within BWI76_RS02240 at 462.273 kb on - strand, within BWI76_RS02240 at 462.274 kb on + strand, within BWI76_RS02240 at 462.299 kb on + strand at 462.317 kb on - strand at 462.343 kb on - strand, within BWI76_RS02245 at 462.343 kb on - strand, within BWI76_RS02245 at 462.376 kb on - strand, within BWI76_RS02245 at 462.380 kb on + strand, within BWI76_RS02245 at 462.382 kb on - strand, within BWI76_RS02245 at 462.435 kb on + strand, within BWI76_RS02245 at 462.443 kb on - strand, within BWI76_RS02245 at 462.443 kb on - strand, within BWI76_RS02245 at 462.443 kb on - strand, within BWI76_RS02245 at 462.514 kb on + strand at 462.526 kb on + strand at 462.558 kb on - strand at 462.566 kb on + strand at 462.566 kb on + strand at 462.566 kb on + strand at 462.566 kb on + strand at 462.566 kb on + strand at 462.566 kb on + strand at 462.566 kb on + strand at 462.566 kb on + strand at 462.566 kb on + strand at 462.566 kb on + strand at 462.566 kb on + strand at 462.566 kb on + strand at 462.566 kb on + strand at 462.566 kb on + strand at 462.566 kb on + strand at 462.566 kb on + strand at 462.566 kb on + strand at 462.566 kb on + strand at 462.566 kb on + strand at 462.574 kb on - strand at 462.574 kb on - strand at 462.574 kb on - strand at 462.574 kb on - strand at 462.574 kb on - strand at 462.574 kb on - strand at 462.574 kb on - strand at 462.574 kb on - strand at 462.574 kb on - strand at 462.574 kb on - strand at 462.574 kb on - strand at 462.574 kb on - strand at 462.574 kb on - strand at 462.574 kb on - strand at 462.574 kb on - strand at 462.574 kb on - strand at 462.613 kb on + strand at 462.613 kb on + strand at 462.656 kb on - strand at 462.664 kb on + strand at 462.680 kb on + strand at 462.680 kb on + strand at 462.683 kb on - strand at 462.685 kb on + strand at 462.685 kb on + strand at 462.685 kb on + strand at 462.685 kb on + strand at 462.690 kb on + strand at 462.690 kb on + strand at 462.690 kb on + strand at 462.690 kb on + strand at 462.690 kb on + strand at 462.690 kb on + strand at 462.690 kb on + strand at 462.690 kb on + strand at 462.690 kb on + strand at 462.690 kb on + strand at 462.690 kb on + strand at 462.693 kb on + strand at 462.693 kb on - strand at 462.693 kb on - strand at 462.693 kb on - strand at 462.693 kb on - strand at 462.698 kb on - strand at 462.698 kb on - strand at 462.699 kb on + strand at 462.706 kb on + strand at 462.708 kb on + strand at 462.714 kb on - strand at 462.718 kb on + strand at 462.727 kb on - strand at 462.727 kb on - strand at 462.729 kb on + strand at 462.729 kb on + strand at 462.729 kb on + strand at 462.733 kb on + strand at 462.733 kb on + strand at 462.734 kb on + strand at 462.737 kb on - strand at 462.737 kb on - strand at 462.746 kb on - strand at 462.749 kb on + strand at 462.755 kb on + strand at 462.760 kb on + strand at 462.763 kb on - strand at 462.765 kb on + strand at 462.793 kb on - strand at 462.802 kb on - strand at 462.813 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Dictyostellum sp.mixed culture-2 remove 460,546 - BWI76_RS02230 0.13 -1.7 460,654 - BWI76_RS02230 0.27 +3.2 460,691 + BWI76_RS02230 0.33 -0.1 460,718 + BWI76_RS02230 0.36 -0.2 460,744 + BWI76_RS02230 0.40 -0.5 460,750 - BWI76_RS02230 0.41 -0.6 460,752 - BWI76_RS02230 0.41 -0.9 460,762 - BWI76_RS02230 0.42 +0.8 460,821 + BWI76_RS02230 0.50 -0.7 460,890 - BWI76_RS02230 0.60 +0.7 461,027 + BWI76_RS02230 0.79 -0.4 461,027 + BWI76_RS02230 0.79 +1.4 461,035 - BWI76_RS02230 0.80 +0.1 461,035 - BWI76_RS02230 0.80 +0.9 461,196 + +1.7 461,409 - +0.4 461,556 + BWI76_RS02235 0.39 -0.1 461,634 + BWI76_RS02235 0.57 -0.4 461,664 - BWI76_RS02235 0.64 -2.5 461,738 + BWI76_RS02235 0.81 +0.8 461,738 + BWI76_RS02235 0.81 +0.0 461,738 + BWI76_RS02235 0.81 -0.3 461,746 - BWI76_RS02235 0.83 -0.2 461,746 - BWI76_RS02235 0.83 -1.0 461,746 - BWI76_RS02235 0.83 -0.1 461,746 - BWI76_RS02235 0.83 +0.8 461,751 - BWI76_RS02235 0.84 +0.4 461,774 + BWI76_RS02235 0.89 -0.1 461,777 - +0.1 461,800 + +1.7 461,809 + -0.5 461,815 + -0.1 461,824 - -1.1 461,828 - +1.1 461,830 - +0.2 461,830 - -0.6 461,830 - -0.5 461,830 - +0.5 461,853 + -0.4 461,853 + -0.5 461,853 + -0.1 461,854 - +2.2 461,861 - +0.4 461,861 - +0.4 461,895 + -1.8 461,895 + +0.1 461,900 + -0.1 461,901 - +1.0 461,908 - +0.8 461,914 + +1.3 461,919 + -1.1 461,919 + -0.3 461,921 + -0.6 461,921 + +0.0 461,927 - -2.0 462,021 - BWI76_RS02240 0.12 +0.6 462,040 - BWI76_RS02240 0.18 -0.6 462,055 + -0.9 462,056 + BWI76_RS02240 0.23 -0.4 462,064 - BWI76_RS02240 0.25 -1.2 462,064 - BWI76_RS02240 0.25 -0.3 462,064 - BWI76_RS02240 0.25 +0.9 462,064 - BWI76_RS02240 0.25 -0.2 462,064 - BWI76_RS02240 0.25 -0.2 462,064 - BWI76_RS02240 0.25 -1.1 462,064 - BWI76_RS02240 0.25 -1.2 462,073 + BWI76_RS02240 0.28 -0.9 462,102 + BWI76_RS02240 0.36 -0.3 462,112 + BWI76_RS02240 0.39 +0.0 462,112 + BWI76_RS02240 0.39 +0.3 462,113 + BWI76_RS02240 0.40 -0.6 462,120 - BWI76_RS02240 0.42 -0.3 462,120 - BWI76_RS02240 0.42 -0.3 462,120 - BWI76_RS02240 0.42 -0.9 462,121 - BWI76_RS02240 0.42 -2.2 462,121 - BWI76_RS02240 0.42 -0.9 462,144 + BWI76_RS02240 0.49 +0.2 462,202 + BWI76_RS02240 0.66 +1.2 462,204 + BWI76_RS02240 0.67 -0.9 462,205 + BWI76_RS02240 0.67 +0.0 462,212 + BWI76_RS02240 0.69 +0.5 462,213 + BWI76_RS02240 0.69 +0.7 462,218 + BWI76_RS02240 0.71 +1.6 462,220 - BWI76_RS02240 0.71 +0.6 462,221 - BWI76_RS02240 0.72 +0.3 462,223 + BWI76_RS02240 0.72 +0.3 462,226 - BWI76_RS02240 0.73 +0.2 462,226 - +1.5 462,228 + BWI76_RS02240 0.74 -0.4 462,260 - BWI76_RS02240 0.83 -0.2 462,273 - BWI76_RS02240 0.87 -0.1 462,274 + BWI76_RS02240 0.88 +0.6 462,299 + -0.5 462,317 - -0.7 462,343 - BWI76_RS02245 0.15 -2.6 462,343 - BWI76_RS02245 0.15 -0.1 462,376 - BWI76_RS02245 0.31 -0.5 462,380 + BWI76_RS02245 0.32 +1.0 462,382 - BWI76_RS02245 0.33 -1.5 462,435 + BWI76_RS02245 0.58 -0.5 462,443 - BWI76_RS02245 0.62 -1.1 462,443 - BWI76_RS02245 0.62 -0.9 462,443 - BWI76_RS02245 0.62 +1.6 462,514 + +0.9 462,526 + -2.6 462,558 - -0.6 462,566 + -0.7 462,566 + -0.4 462,566 + +0.2 462,566 + +0.3 462,566 + +0.2 462,566 + -1.1 462,566 + -0.5 462,566 + -0.9 462,566 + -1.1 462,566 + -1.6 462,566 + +3.1 462,566 + -0.1 462,566 + +0.4 462,566 + -0.8 462,566 + +0.9 462,566 + -1.9 462,566 + -0.1 462,566 + -0.1 462,566 + +0.5 462,574 - +2.1 462,574 - +1.3 462,574 - -0.7 462,574 - -0.5 462,574 - -0.6 462,574 - +1.5 462,574 - +1.0 462,574 - +0.9 462,574 - -0.1 462,574 - +0.4 462,574 - +0.8 462,574 - -0.7 462,574 - -1.0 462,574 - -1.0 462,574 - -3.6 462,574 - -1.5 462,613 + +1.0 462,613 + +0.1 462,656 - +0.8 462,664 + -0.1 462,680 + -0.3 462,680 + +0.5 462,683 - +1.0 462,685 + +1.4 462,685 + -1.3 462,685 + -0.1 462,685 + -1.6 462,690 + -0.1 462,690 + -0.7 462,690 + -0.3 462,690 + +1.5 462,690 + -0.3 462,690 + +1.9 462,690 + -0.4 462,690 + +1.1 462,690 + +0.7 462,690 + -1.8 462,690 + -0.1 462,693 + +0.1 462,693 - -0.3 462,693 - -1.3 462,693 - +0.6 462,693 - -0.4 462,698 - +0.2 462,698 - -1.4 462,699 + -0.3 462,706 + +3.5 462,708 + -0.8 462,714 - +0.4 462,718 + +0.5 462,727 - +1.5 462,727 - +0.1 462,729 + +1.2 462,729 + +0.4 462,729 + +1.2 462,733 + -1.3 462,733 + -0.3 462,734 + +0.6 462,737 - -0.7 462,737 - +0.2 462,746 - +2.8 462,749 + -0.1 462,755 + -1.1 462,760 + -0.5 462,763 - -0.3 462,765 + +1.0 462,793 - +0.8 462,802 - -0.2 462,813 + -0.1
Or see this region's nucleotide sequence