Experiment: Dictyostellum sp.mixed culture-2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS00685 and BWI76_RS00690 are separated by 50 nucleotides BWI76_RS00690 and BWI76_RS00695 are separated by 41 nucleotides BWI76_RS00695 and BWI76_RS00700 are separated by 5 nucleotides
BWI76_RS00685: BWI76_RS00685 - ABC transporter ATP-binding protein, at 140,828 to 140,929
_RS00685
BWI76_RS00690: BWI76_RS00690 - transcriptional activator RhaS, at 140,980 to 141,816
_RS00690
BWI76_RS00695: BWI76_RS00695 - AraC family transcriptional regulator, at 141,858 to 142,739
_RS00695
BWI76_RS00700: BWI76_RS00700 - rhamnose/proton symporter RhaT, at 142,745 to 143,779
_RS00700
Position (kb) 141
142
143 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 140.985 kb on - strand at 140.985 kb on - strand at 140.986 kb on + strand at 140.986 kb on + strand at 140.986 kb on + strand at 140.986 kb on + strand at 141.138 kb on + strand, within BWI76_RS00690 at 141.138 kb on + strand, within BWI76_RS00690 at 141.138 kb on + strand, within BWI76_RS00690 at 141.226 kb on + strand, within BWI76_RS00690 at 141.328 kb on + strand, within BWI76_RS00690 at 141.368 kb on + strand, within BWI76_RS00690 at 141.369 kb on + strand at 141.825 kb on - strand at 142.002 kb on - strand, within BWI76_RS00695 at 142.044 kb on - strand, within BWI76_RS00695 at 142.045 kb on + strand, within BWI76_RS00695 at 142.149 kb on + strand, within BWI76_RS00695 at 142.211 kb on + strand, within BWI76_RS00695 at 142.263 kb on - strand, within BWI76_RS00695 at 142.309 kb on + strand, within BWI76_RS00695 at 142.327 kb on - strand, within BWI76_RS00695 at 142.327 kb on - strand, within BWI76_RS00695 at 142.411 kb on + strand, within BWI76_RS00695 at 142.461 kb on - strand, within BWI76_RS00695 at 142.601 kb on + strand, within BWI76_RS00695 at 142.604 kb on - strand, within BWI76_RS00695 at 142.645 kb on + strand, within BWI76_RS00695 at 142.653 kb on - strand at 142.908 kb on - strand, within BWI76_RS00700 at 142.952 kb on - strand, within BWI76_RS00700 at 143.140 kb on - strand, within BWI76_RS00700 at 143.145 kb on + strand, within BWI76_RS00700 at 143.153 kb on - strand, within BWI76_RS00700 at 143.155 kb on + strand, within BWI76_RS00700 at 143.163 kb on - strand, within BWI76_RS00700 at 143.163 kb on - strand, within BWI76_RS00700 at 143.243 kb on - strand, within BWI76_RS00700 at 143.255 kb on - strand, within BWI76_RS00700 at 143.305 kb on + strand, within BWI76_RS00700 at 143.313 kb on - strand, within BWI76_RS00700 at 143.324 kb on + strand, within BWI76_RS00700 at 143.332 kb on - strand, within BWI76_RS00700 at 143.390 kb on - strand, within BWI76_RS00700 at 143.616 kb on - strand, within BWI76_RS00700 at 143.673 kb on - strand, within BWI76_RS00700 at 143.714 kb on + strand at 143.724 kb on + strand at 143.724 kb on + strand at 143.732 kb on - strand at 143.732 kb on - strand at 143.732 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Dictyostellum sp.mixed culture-2 remove 140,985 - -1.4 140,985 - -0.1 140,986 + +0.2 140,986 + +1.0 140,986 + +0.2 140,986 + +0.4 141,138 + BWI76_RS00690 0.19 +0.2 141,138 + BWI76_RS00690 0.19 -0.3 141,138 + BWI76_RS00690 0.19 +0.1 141,226 + BWI76_RS00690 0.29 +0.9 141,328 + BWI76_RS00690 0.42 +0.0 141,368 + BWI76_RS00690 0.46 -0.1 141,369 + -1.6 141,825 - +0.6 142,002 - BWI76_RS00695 0.16 +0.3 142,044 - BWI76_RS00695 0.21 -0.1 142,045 + BWI76_RS00695 0.21 -0.4 142,149 + BWI76_RS00695 0.33 +2.5 142,211 + BWI76_RS00695 0.40 +0.5 142,263 - BWI76_RS00695 0.46 -2.4 142,309 + BWI76_RS00695 0.51 +3.0 142,327 - BWI76_RS00695 0.53 -2.0 142,327 - BWI76_RS00695 0.53 +0.6 142,411 + BWI76_RS00695 0.63 +0.9 142,461 - BWI76_RS00695 0.68 +2.1 142,601 + BWI76_RS00695 0.84 -1.3 142,604 - BWI76_RS00695 0.85 -0.8 142,645 + BWI76_RS00695 0.89 -0.1 142,653 - +0.1 142,908 - BWI76_RS00700 0.16 +2.0 142,952 - BWI76_RS00700 0.20 +0.9 143,140 - BWI76_RS00700 0.38 -0.3 143,145 + BWI76_RS00700 0.39 -1.3 143,153 - BWI76_RS00700 0.39 +0.3 143,155 + BWI76_RS00700 0.40 -4.0 143,163 - BWI76_RS00700 0.40 -2.2 143,163 - BWI76_RS00700 0.40 +1.8 143,243 - BWI76_RS00700 0.48 +0.6 143,255 - BWI76_RS00700 0.49 -0.1 143,305 + BWI76_RS00700 0.54 +1.2 143,313 - BWI76_RS00700 0.55 +0.4 143,324 + BWI76_RS00700 0.56 +1.3 143,332 - BWI76_RS00700 0.57 +0.9 143,390 - BWI76_RS00700 0.62 -1.1 143,616 - BWI76_RS00700 0.84 -0.6 143,673 - BWI76_RS00700 0.90 +1.3 143,714 + +0.2 143,724 + +2.5 143,724 + +0.3 143,732 - +0.8 143,732 - +0.5 143,732 - +0.5
Or see this region's nucleotide sequence