Experiment: Dictyostellum sp.mixed culture-2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS00665 and BWI76_RS00670 are separated by 82 nucleotides BWI76_RS00670 and BWI76_RS00675 are separated by 137 nucleotides
BWI76_RS00665: BWI76_RS00665 - rhamnose ABC transporter substrate-binding protein, at 135,909 to 136,895
_RS00665
BWI76_RS00670: BWI76_RS00670 - Rhamnulose-1-phosphate aldolase (EC 4.1.2.19) <small>(from data)</small>, at 136,978 to 137,808
_RS00670
BWI76_RS00675: BWI76_RS00675 - L-rhamnose isomerase (EC 5.3.1.14) <small>(from data)</small>, at 137,946 to 139,205
_RS00675
Position (kb) 136
137
138 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 136.080 kb on + strand, within BWI76_RS00665 at 136.270 kb on + strand, within BWI76_RS00665 at 136.272 kb on - strand, within BWI76_RS00665 at 136.348 kb on + strand, within BWI76_RS00665 at 136.387 kb on - strand, within BWI76_RS00665 at 136.409 kb on - strand, within BWI76_RS00665 at 136.525 kb on - strand, within BWI76_RS00665 at 136.525 kb on - strand, within BWI76_RS00665 at 136.571 kb on + strand, within BWI76_RS00665 at 136.579 kb on - strand, within BWI76_RS00665 at 136.696 kb on + strand, within BWI76_RS00665 at 136.715 kb on - strand, within BWI76_RS00665 at 136.997 kb on - strand at 136.997 kb on - strand at 137.015 kb on - strand at 137.016 kb on + strand at 137.072 kb on - strand, within BWI76_RS00670 at 137.148 kb on + strand, within BWI76_RS00670 at 137.324 kb on - strand, within BWI76_RS00670 at 137.356 kb on + strand, within BWI76_RS00670 at 137.356 kb on + strand, within BWI76_RS00670 at 137.364 kb on - strand, within BWI76_RS00670 at 137.378 kb on - strand, within BWI76_RS00670 at 137.457 kb on + strand, within BWI76_RS00670 at 137.457 kb on + strand, within BWI76_RS00670 at 137.535 kb on + strand, within BWI76_RS00670 at 137.640 kb on - strand, within BWI76_RS00670 at 137.770 kb on - strand at 137.778 kb on + strand at 137.808 kb on - strand at 137.846 kb on - strand at 137.846 kb on - strand at 137.846 kb on - strand at 137.950 kb on - strand at 138.134 kb on - strand, within BWI76_RS00675 at 138.184 kb on + strand, within BWI76_RS00675 at 138.193 kb on - strand, within BWI76_RS00675 at 138.211 kb on + strand, within BWI76_RS00675 at 138.225 kb on - strand, within BWI76_RS00675 at 138.375 kb on - strand, within BWI76_RS00675 at 138.501 kb on - strand, within BWI76_RS00675 at 138.501 kb on - strand, within BWI76_RS00675 at 138.530 kb on + strand, within BWI76_RS00675 at 138.543 kb on - strand, within BWI76_RS00675 at 138.543 kb on - strand, within BWI76_RS00675 at 138.563 kb on - strand, within BWI76_RS00675 at 138.715 kb on + strand, within BWI76_RS00675 at 138.723 kb on - strand, within BWI76_RS00675 at 138.738 kb on - strand, within BWI76_RS00675 at 138.757 kb on + strand, within BWI76_RS00675 at 138.767 kb on + strand, within BWI76_RS00675 at 138.767 kb on + strand at 138.775 kb on - strand, within BWI76_RS00675 at 138.775 kb on - strand, within BWI76_RS00675 at 138.775 kb on - strand, within BWI76_RS00675
Per-strain Table
Position Strand Gene LocusTag Fraction Dictyostellum sp.mixed culture-2 remove 136,080 + BWI76_RS00665 0.17 +0.1 136,270 + BWI76_RS00665 0.37 +0.6 136,272 - BWI76_RS00665 0.37 +0.5 136,348 + BWI76_RS00665 0.44 +1.1 136,387 - BWI76_RS00665 0.48 -0.1 136,409 - BWI76_RS00665 0.51 +1.5 136,525 - BWI76_RS00665 0.62 +0.5 136,525 - BWI76_RS00665 0.62 +0.5 136,571 + BWI76_RS00665 0.67 +1.9 136,579 - BWI76_RS00665 0.68 +0.1 136,696 + BWI76_RS00665 0.80 -0.4 136,715 - BWI76_RS00665 0.82 +3.5 136,997 - -0.4 136,997 - +0.2 137,015 - -0.3 137,016 + -1.6 137,072 - BWI76_RS00670 0.11 +1.1 137,148 + BWI76_RS00670 0.20 -0.1 137,324 - BWI76_RS00670 0.42 +1.8 137,356 + BWI76_RS00670 0.45 +0.4 137,356 + BWI76_RS00670 0.45 +1.5 137,364 - BWI76_RS00670 0.46 +0.3 137,378 - BWI76_RS00670 0.48 +1.0 137,457 + BWI76_RS00670 0.58 +0.7 137,457 + BWI76_RS00670 0.58 -2.8 137,535 + BWI76_RS00670 0.67 +1.1 137,640 - BWI76_RS00670 0.80 -0.3 137,770 - +0.6 137,778 + -0.2 137,808 - -2.0 137,846 - +0.0 137,846 - +1.8 137,846 - -1.6 137,950 - +0.2 138,134 - BWI76_RS00675 0.15 -0.1 138,184 + BWI76_RS00675 0.19 +0.4 138,193 - BWI76_RS00675 0.20 -0.8 138,211 + BWI76_RS00675 0.21 +2.0 138,225 - BWI76_RS00675 0.22 -1.2 138,375 - BWI76_RS00675 0.34 -0.4 138,501 - BWI76_RS00675 0.44 +1.0 138,501 - BWI76_RS00675 0.44 -0.4 138,530 + BWI76_RS00675 0.46 -2.9 138,543 - BWI76_RS00675 0.47 -0.8 138,543 - BWI76_RS00675 0.47 -0.2 138,563 - BWI76_RS00675 0.49 -1.4 138,715 + BWI76_RS00675 0.61 +0.9 138,723 - BWI76_RS00675 0.62 -0.2 138,738 - BWI76_RS00675 0.63 +0.1 138,757 + BWI76_RS00675 0.64 -0.3 138,767 + BWI76_RS00675 0.65 +0.2 138,767 + -1.8 138,775 - BWI76_RS00675 0.66 +0.1 138,775 - BWI76_RS00675 0.66 -0.1 138,775 - BWI76_RS00675 0.66 -1.1
Or see this region's nucleotide sequence