Experiment: Dictyostellum sp.mixed culture-2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS00065 and BWI76_RS00070 are separated by 326 nucleotides BWI76_RS00070 and BWI76_RS00075 are separated by 50 nucleotides BWI76_RS00075 and BWI76_RS00080 overlap by 4 nucleotides
BWI76_RS00065: BWI76_RS00065 - MurR/RpiR family transcriptional regulator, at 12,271 to 13,152
_RS00065
BWI76_RS00070: BWI76_RS00070 - MFS transporter, at 13,479 to 14,969
_RS00070
BWI76_RS00075: BWI76_RS00075 - N-acetylmannosamine-6-phosphate 2-epimerase, at 15,020 to 15,709
_RS00075
BWI76_RS00080: BWI76_RS00080 - N-acetylmannosamine kinase, at 15,706 to 16,581
_RS00080
Position (kb) 13
14
15 Strain fitness (log2 ratio) -2
-1
0
1 at 12.527 kb on - strand, within BWI76_RS00065 at 12.584 kb on + strand, within BWI76_RS00065 at 12.584 kb on + strand, within BWI76_RS00065 at 12.695 kb on - strand, within BWI76_RS00065 at 12.749 kb on + strand, within BWI76_RS00065 at 12.749 kb on + strand, within BWI76_RS00065 at 12.822 kb on + strand, within BWI76_RS00065 at 13.124 kb on + strand at 13.253 kb on + strand at 13.471 kb on - strand at 13.471 kb on - strand at 13.575 kb on + strand at 13.624 kb on + strand at 13.648 kb on - strand, within BWI76_RS00070 at 13.693 kb on + strand, within BWI76_RS00070 at 13.794 kb on - strand, within BWI76_RS00070 at 13.842 kb on - strand, within BWI76_RS00070 at 13.858 kb on + strand, within BWI76_RS00070 at 13.858 kb on + strand, within BWI76_RS00070 at 13.980 kb on - strand, within BWI76_RS00070 at 13.993 kb on - strand, within BWI76_RS00070 at 14.009 kb on - strand, within BWI76_RS00070 at 14.184 kb on + strand, within BWI76_RS00070 at 14.246 kb on + strand, within BWI76_RS00070 at 14.277 kb on + strand, within BWI76_RS00070 at 14.277 kb on - strand, within BWI76_RS00070 at 14.285 kb on - strand, within BWI76_RS00070 at 14.285 kb on - strand, within BWI76_RS00070 at 14.285 kb on - strand, within BWI76_RS00070 at 14.389 kb on - strand, within BWI76_RS00070 at 14.548 kb on - strand, within BWI76_RS00070 at 14.607 kb on - strand, within BWI76_RS00070 at 14.673 kb on - strand, within BWI76_RS00070 at 14.759 kb on + strand, within BWI76_RS00070 at 14.884 kb on + strand at 14.922 kb on - strand at 14.925 kb on - strand at 14.925 kb on - strand at 15.018 kb on - strand at 15.089 kb on + strand, within BWI76_RS00075 at 15.320 kb on - strand, within BWI76_RS00075 at 15.361 kb on + strand, within BWI76_RS00075
Per-strain Table
Position Strand Gene LocusTag Fraction Dictyostellum sp.mixed culture-2 remove 12,527 - BWI76_RS00065 0.29 +0.2 12,584 + BWI76_RS00065 0.35 -0.4 12,584 + BWI76_RS00065 0.35 -1.7 12,695 - BWI76_RS00065 0.48 -1.7 12,749 + BWI76_RS00065 0.54 -2.1 12,749 + BWI76_RS00065 0.54 +0.3 12,822 + BWI76_RS00065 0.62 -1.5 13,124 + -2.0 13,253 + +0.2 13,471 - -0.3 13,471 - +0.2 13,575 + -1.0 13,624 + -0.2 13,648 - BWI76_RS00070 0.11 +1.7 13,693 + BWI76_RS00070 0.14 +0.1 13,794 - BWI76_RS00070 0.21 -1.8 13,842 - BWI76_RS00070 0.24 -1.1 13,858 + BWI76_RS00070 0.25 -0.5 13,858 + BWI76_RS00070 0.25 +0.3 13,980 - BWI76_RS00070 0.34 +1.4 13,993 - BWI76_RS00070 0.34 +0.8 14,009 - BWI76_RS00070 0.36 -0.9 14,184 + BWI76_RS00070 0.47 +1.4 14,246 + BWI76_RS00070 0.51 -0.6 14,277 + BWI76_RS00070 0.54 +0.8 14,277 - BWI76_RS00070 0.54 +1.2 14,285 - BWI76_RS00070 0.54 -0.4 14,285 - BWI76_RS00070 0.54 -0.8 14,285 - BWI76_RS00070 0.54 +0.1 14,389 - BWI76_RS00070 0.61 +0.5 14,548 - BWI76_RS00070 0.72 -0.3 14,607 - BWI76_RS00070 0.76 +1.5 14,673 - BWI76_RS00070 0.80 -0.4 14,759 + BWI76_RS00070 0.86 -0.0 14,884 + -1.6 14,922 - -0.1 14,925 - -0.5 14,925 - +0.7 15,018 - -0.6 15,089 + BWI76_RS00075 0.10 +1.5 15,320 - BWI76_RS00075 0.43 +0.0 15,361 + BWI76_RS00075 0.49 +0.2
Or see this region's nucleotide sequence