Experiment: Dictyostellum sp.mixed culture-1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS27500 and BWI76_RS27505 are separated by 150 nucleotides BWI76_RS27505 and BWI76_RS27510 are separated by 448 nucleotides BWI76_RS27510 and BWI76_RS27515 are separated by 21 nucleotides
BWI76_RS27500: BWI76_RS27500 - sulfate transporter subunit, at 5,705,614 to 5,706,603
_RS27500
BWI76_RS27505: BWI76_RS27505 - septal ring assembly protein ZapB, at 5,706,754 to 5,706,993
_RS27505
BWI76_RS27510: BWI76_RS27510 - aquaporin, at 5,707,442 to 5,708,293
_RS27510
BWI76_RS27515: BWI76_RS27515 - glycerol kinase, at 5,708,315 to 5,709,826
_RS27515
Position (kb) 5707
5708
5709 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 5706.584 kb on - strand at 5706.585 kb on - strand at 5706.585 kb on - strand at 5706.603 kb on + strand at 5706.624 kb on + strand at 5706.635 kb on + strand at 5706.712 kb on + strand at 5706.717 kb on + strand at 5706.772 kb on + strand at 5706.780 kb on - strand, within BWI76_RS27505 at 5706.810 kb on - strand, within BWI76_RS27505 at 5706.866 kb on - strand, within BWI76_RS27505 at 5706.930 kb on - strand, within BWI76_RS27505 at 5706.989 kb on - strand at 5706.994 kb on + strand at 5706.994 kb on + strand at 5707.012 kb on - strand at 5707.087 kb on - strand at 5707.092 kb on - strand at 5707.534 kb on + strand, within BWI76_RS27510 at 5707.625 kb on - strand, within BWI76_RS27510 at 5707.647 kb on - strand, within BWI76_RS27510 at 5707.656 kb on + strand, within BWI76_RS27510 at 5707.711 kb on - strand, within BWI76_RS27510 at 5707.793 kb on + strand, within BWI76_RS27510 at 5708.038 kb on - strand, within BWI76_RS27510 at 5708.177 kb on - strand, within BWI76_RS27510 at 5708.208 kb on + strand at 5708.216 kb on - strand at 5708.226 kb on - strand at 5708.268 kb on - strand at 5708.275 kb on + strand at 5708.283 kb on - strand at 5708.283 kb on - strand at 5708.283 kb on - strand at 5708.288 kb on + strand at 5708.358 kb on - strand at 5708.454 kb on + strand at 5708.456 kb on - strand at 5708.465 kb on + strand at 5708.465 kb on + strand at 5708.478 kb on - strand, within BWI76_RS27515 at 5708.487 kb on + strand, within BWI76_RS27515 at 5708.487 kb on + strand, within BWI76_RS27515 at 5708.487 kb on + strand, within BWI76_RS27515 at 5708.487 kb on + strand, within BWI76_RS27515 at 5708.487 kb on + strand, within BWI76_RS27515 at 5708.487 kb on + strand, within BWI76_RS27515 at 5708.487 kb on + strand, within BWI76_RS27515 at 5708.487 kb on + strand, within BWI76_RS27515 at 5708.487 kb on + strand, within BWI76_RS27515 at 5708.487 kb on + strand, within BWI76_RS27515 at 5708.487 kb on + strand, within BWI76_RS27515 at 5708.487 kb on + strand, within BWI76_RS27515 at 5708.495 kb on - strand, within BWI76_RS27515 at 5708.495 kb on - strand, within BWI76_RS27515 at 5708.495 kb on - strand at 5708.495 kb on - strand, within BWI76_RS27515 at 5708.495 kb on - strand, within BWI76_RS27515 at 5708.495 kb on - strand, within BWI76_RS27515 at 5708.495 kb on - strand, within BWI76_RS27515 at 5708.504 kb on + strand, within BWI76_RS27515 at 5708.517 kb on - strand, within BWI76_RS27515 at 5708.667 kb on - strand, within BWI76_RS27515 at 5708.673 kb on + strand, within BWI76_RS27515 at 5708.808 kb on - strand, within BWI76_RS27515 at 5708.861 kb on + strand, within BWI76_RS27515 at 5708.874 kb on - strand, within BWI76_RS27515 at 5708.984 kb on + strand, within BWI76_RS27515 at 5708.995 kb on + strand, within BWI76_RS27515 at 5709.071 kb on + strand, within BWI76_RS27515 at 5709.084 kb on - strand, within BWI76_RS27515 at 5709.131 kb on - strand, within BWI76_RS27515 at 5709.173 kb on + strand, within BWI76_RS27515
Per-strain Table
Position Strand Gene LocusTag Fraction Dictyostellum sp.mixed culture-1 remove 5,706,584 - -0.4 5,706,585 - -0.2 5,706,585 - +1.4 5,706,603 + +0.6 5,706,624 + -1.4 5,706,635 + +0.5 5,706,712 + +1.0 5,706,717 + -1.9 5,706,772 + -0.9 5,706,780 - BWI76_RS27505 0.11 -1.9 5,706,810 - BWI76_RS27505 0.23 +0.4 5,706,866 - BWI76_RS27505 0.47 -1.5 5,706,930 - BWI76_RS27505 0.73 +1.0 5,706,989 - -0.7 5,706,994 + -0.5 5,706,994 + -1.5 5,707,012 - +0.7 5,707,087 - -0.4 5,707,092 - +0.3 5,707,534 + BWI76_RS27510 0.11 -0.5 5,707,625 - BWI76_RS27510 0.21 +0.3 5,707,647 - BWI76_RS27510 0.24 +0.2 5,707,656 + BWI76_RS27510 0.25 +1.3 5,707,711 - BWI76_RS27510 0.32 +1.1 5,707,793 + BWI76_RS27510 0.41 +4.0 5,708,038 - BWI76_RS27510 0.70 +1.1 5,708,177 - BWI76_RS27510 0.86 -0.6 5,708,208 + -2.3 5,708,216 - +0.1 5,708,226 - +2.3 5,708,268 - -0.5 5,708,275 + +0.0 5,708,283 - +3.5 5,708,283 - +0.6 5,708,283 - +1.1 5,708,288 + -2.4 5,708,358 - -0.0 5,708,454 + -0.2 5,708,456 - +0.5 5,708,465 + +0.7 5,708,465 + -0.9 5,708,478 - BWI76_RS27515 0.11 -1.1 5,708,487 + BWI76_RS27515 0.11 +1.0 5,708,487 + BWI76_RS27515 0.11 +1.9 5,708,487 + BWI76_RS27515 0.11 +0.9 5,708,487 + BWI76_RS27515 0.11 -0.1 5,708,487 + BWI76_RS27515 0.11 -0.3 5,708,487 + BWI76_RS27515 0.11 -1.2 5,708,487 + BWI76_RS27515 0.11 -0.4 5,708,487 + BWI76_RS27515 0.11 +0.5 5,708,487 + BWI76_RS27515 0.11 -1.6 5,708,487 + BWI76_RS27515 0.11 -0.2 5,708,487 + BWI76_RS27515 0.11 -1.2 5,708,487 + BWI76_RS27515 0.11 -0.6 5,708,495 - BWI76_RS27515 0.12 -0.1 5,708,495 - BWI76_RS27515 0.12 -0.5 5,708,495 - -0.0 5,708,495 - BWI76_RS27515 0.12 -1.2 5,708,495 - BWI76_RS27515 0.12 -0.4 5,708,495 - BWI76_RS27515 0.12 +0.7 5,708,495 - BWI76_RS27515 0.12 -2.7 5,708,504 + BWI76_RS27515 0.12 -0.3 5,708,517 - BWI76_RS27515 0.13 +0.6 5,708,667 - BWI76_RS27515 0.23 -1.2 5,708,673 + BWI76_RS27515 0.24 -0.4 5,708,808 - BWI76_RS27515 0.33 +0.6 5,708,861 + BWI76_RS27515 0.36 +0.3 5,708,874 - BWI76_RS27515 0.37 -0.7 5,708,984 + BWI76_RS27515 0.44 +3.7 5,708,995 + BWI76_RS27515 0.45 -0.7 5,709,071 + BWI76_RS27515 0.50 +0.9 5,709,084 - BWI76_RS27515 0.51 +3.3 5,709,131 - BWI76_RS27515 0.54 +0.0 5,709,173 + BWI76_RS27515 0.57 -1.0
Or see this region's nucleotide sequence