Experiment: Dictyostellum sp.mixed culture-1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS23425 and BWI76_RS23430 are separated by 311 nucleotides BWI76_RS23430 and BWI76_RS23435 are separated by 542 nucleotides
BWI76_RS23425: BWI76_RS23425 - MFS transporter, at 4,886,434 to 4,887,852
_RS23425
BWI76_RS23430: BWI76_RS23430 - 2-deoxy-D-gluconate 3-dehydrogenase, at 4,888,164 to 4,888,925
_RS23430
BWI76_RS23435: BWI76_RS23435 - oligogalacturonate lyase, at 4,889,468 to 4,890,643
_RS23435
Position (kb)
4888
4889 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 4887.375 kb on - strand, within BWI76_RS23425 at 4887.492 kb on - strand, within BWI76_RS23425 at 4887.556 kb on + strand, within BWI76_RS23425 at 4887.569 kb on - strand, within BWI76_RS23425 at 4887.569 kb on - strand, within BWI76_RS23425 at 4887.574 kb on - strand, within BWI76_RS23425 at 4887.961 kb on + strand at 4888.053 kb on + strand at 4888.070 kb on - strand at 4888.212 kb on - strand at 4888.316 kb on + strand, within BWI76_RS23430 at 4888.337 kb on + strand, within BWI76_RS23430 at 4888.450 kb on + strand, within BWI76_RS23430 at 4888.458 kb on - strand, within BWI76_RS23430 at 4888.458 kb on - strand, within BWI76_RS23430 at 4888.521 kb on + strand, within BWI76_RS23430 at 4888.529 kb on - strand, within BWI76_RS23430 at 4888.638 kb on + strand, within BWI76_RS23430 at 4888.693 kb on + strand, within BWI76_RS23430 at 4888.711 kb on - strand, within BWI76_RS23430 at 4888.714 kb on - strand, within BWI76_RS23430 at 4888.846 kb on + strand, within BWI76_RS23430 at 4888.846 kb on + strand, within BWI76_RS23430 at 4888.854 kb on - strand at 4888.854 kb on - strand at 4888.854 kb on - strand at 4888.854 kb on - strand at 4888.857 kb on + strand at 4888.891 kb on + strand at 4888.953 kb on + strand at 4888.962 kb on - strand at 4888.969 kb on + strand at 4888.977 kb on - strand at 4888.995 kb on + strand at 4889.002 kb on + strand at 4889.003 kb on - strand at 4889.009 kb on + strand at 4889.018 kb on - strand at 4889.027 kb on - strand at 4889.028 kb on - strand at 4889.075 kb on + strand at 4889.075 kb on + strand at 4889.083 kb on - strand at 4889.432 kb on + strand at 4889.440 kb on - strand at 4889.470 kb on + strand at 4889.882 kb on - strand, within BWI76_RS23435
Per-strain Table
Position Strand Gene LocusTag Fraction Dictyostellum sp.mixed culture-1 remove 4,887,375 - BWI76_RS23425 0.66 -0.5 4,887,492 - BWI76_RS23425 0.75 +2.5 4,887,556 + BWI76_RS23425 0.79 +0.2 4,887,569 - BWI76_RS23425 0.80 -1.2 4,887,569 - BWI76_RS23425 0.80 -0.2 4,887,574 - BWI76_RS23425 0.80 -0.1 4,887,961 + -1.6 4,888,053 + +0.7 4,888,070 - -0.3 4,888,212 - -0.5 4,888,316 + BWI76_RS23430 0.20 +1.9 4,888,337 + BWI76_RS23430 0.23 +0.1 4,888,450 + BWI76_RS23430 0.38 +1.0 4,888,458 - BWI76_RS23430 0.39 -0.1 4,888,458 - BWI76_RS23430 0.39 +0.2 4,888,521 + BWI76_RS23430 0.47 -0.1 4,888,529 - BWI76_RS23430 0.48 -1.0 4,888,638 + BWI76_RS23430 0.62 +2.9 4,888,693 + BWI76_RS23430 0.69 -0.8 4,888,711 - BWI76_RS23430 0.72 +1.4 4,888,714 - BWI76_RS23430 0.72 -1.3 4,888,846 + BWI76_RS23430 0.90 -0.3 4,888,846 + BWI76_RS23430 0.90 +1.1 4,888,854 - -1.1 4,888,854 - +1.0 4,888,854 - -1.0 4,888,854 - -0.1 4,888,857 + +0.8 4,888,891 + -1.0 4,888,953 + -1.0 4,888,962 - -0.2 4,888,969 + -0.7 4,888,977 - -1.0 4,888,995 + +0.5 4,889,002 + +0.9 4,889,003 - -1.5 4,889,009 + -0.6 4,889,018 - -0.2 4,889,027 - +0.9 4,889,028 - -0.6 4,889,075 + -0.3 4,889,075 + -1.3 4,889,083 - +0.1 4,889,432 + +1.4 4,889,440 - -2.3 4,889,470 + +1.4 4,889,882 - BWI76_RS23435 0.35 +0.7
Or see this region's nucleotide sequence