Experiment: Dictyostellum sp.mixed culture-1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS22340 and BWI76_RS22345 are separated by 208 nucleotides BWI76_RS22345 and BWI76_RS22350 are separated by 3 nucleotides BWI76_RS22350 and BWI76_RS22355 overlap by 10 nucleotides BWI76_RS22355 and BWI76_RS22360 are separated by 0 nucleotides
BWI76_RS22340: BWI76_RS22340 - formate hydrogenlyase regulatory protein HycA, at 4,657,318 to 4,657,767
_RS22340
BWI76_RS22345: BWI76_RS22345 - hydrogenase maturation nickel metallochaperone HypA, at 4,657,976 to 4,658,326
_RS22345
BWI76_RS22350: BWI76_RS22350 - hydrogenase nickel incorporation protein HypB, at 4,658,330 to 4,659,202
_RS22350
BWI76_RS22355: BWI76_RS22355 - hydrogenase assembly chaperone, at 4,659,193 to 4,659,465
_RS22355
BWI76_RS22360: BWI76_RS22360 - hydrogenase formation protein HypD, at 4,659,466 to 4,660,587
_RS22360
Position (kb) 4658
4659
4660 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 4657.609 kb on - strand, within BWI76_RS22340 at 4657.659 kb on + strand, within BWI76_RS22340 at 4657.659 kb on + strand, within BWI76_RS22340 at 4657.667 kb on - strand, within BWI76_RS22340 at 4657.671 kb on + strand, within BWI76_RS22340 at 4657.783 kb on + strand at 4657.783 kb on + strand at 4657.989 kb on + strand at 4657.989 kb on + strand at 4657.997 kb on - strand at 4658.045 kb on + strand, within BWI76_RS22345 at 4658.102 kb on + strand, within BWI76_RS22345 at 4658.151 kb on + strand, within BWI76_RS22345 at 4658.161 kb on + strand, within BWI76_RS22345 at 4658.174 kb on - strand, within BWI76_RS22345 at 4658.259 kb on - strand, within BWI76_RS22345 at 4658.426 kb on + strand, within BWI76_RS22350 at 4658.470 kb on + strand, within BWI76_RS22350 at 4658.478 kb on - strand, within BWI76_RS22350 at 4658.745 kb on - strand, within BWI76_RS22350 at 4658.745 kb on - strand, within BWI76_RS22350 at 4658.950 kb on + strand, within BWI76_RS22350 at 4659.156 kb on + strand at 4659.163 kb on - strand at 4659.254 kb on - strand, within BWI76_RS22355 at 4659.334 kb on + strand, within BWI76_RS22355 at 4659.936 kb on - strand, within BWI76_RS22360 at 4660.068 kb on + strand, within BWI76_RS22360 at 4660.101 kb on - strand, within BWI76_RS22360 at 4660.135 kb on - strand, within BWI76_RS22360 at 4660.196 kb on - strand, within BWI76_RS22360
Per-strain Table
Position Strand Gene LocusTag Fraction Dictyostellum sp.mixed culture-1 remove 4,657,609 - BWI76_RS22340 0.65 +1.8 4,657,659 + BWI76_RS22340 0.76 -2.3 4,657,659 + BWI76_RS22340 0.76 +0.2 4,657,667 - BWI76_RS22340 0.78 +0.3 4,657,671 + BWI76_RS22340 0.78 -0.3 4,657,783 + +1.0 4,657,783 + +0.8 4,657,989 + -0.3 4,657,989 + -0.1 4,657,997 - +0.2 4,658,045 + BWI76_RS22345 0.20 +0.6 4,658,102 + BWI76_RS22345 0.36 +0.1 4,658,151 + BWI76_RS22345 0.50 -0.5 4,658,161 + BWI76_RS22345 0.53 +0.9 4,658,174 - BWI76_RS22345 0.56 -1.0 4,658,259 - BWI76_RS22345 0.81 +0.6 4,658,426 + BWI76_RS22350 0.11 +0.7 4,658,470 + BWI76_RS22350 0.16 -0.1 4,658,478 - BWI76_RS22350 0.17 +3.3 4,658,745 - BWI76_RS22350 0.48 +0.5 4,658,745 - BWI76_RS22350 0.48 +1.5 4,658,950 + BWI76_RS22350 0.71 +1.0 4,659,156 + -0.1 4,659,163 - -1.6 4,659,254 - BWI76_RS22355 0.22 -0.2 4,659,334 + BWI76_RS22355 0.52 -0.9 4,659,936 - BWI76_RS22360 0.42 +0.6 4,660,068 + BWI76_RS22360 0.54 +1.0 4,660,101 - BWI76_RS22360 0.57 -0.4 4,660,135 - BWI76_RS22360 0.60 -1.0 4,660,196 - BWI76_RS22360 0.65 -1.1
Or see this region's nucleotide sequence