Experiment: Dictyostellum sp.mixed culture-1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS21910 and BWI76_RS21915 are separated by 74 nucleotides BWI76_RS21915 and BWI76_RS21920 are separated by 6 nucleotides BWI76_RS21920 and BWI76_RS21925 are separated by 19 nucleotides
BWI76_RS21910: BWI76_RS21910 - glyoxylate/hydroxypyruvate reductase A, at 4,578,260 to 4,579,192
_RS21910
BWI76_RS21915: BWI76_RS21915 - short-chain dehydrogenase/reductase SDR, at 4,579,267 to 4,580,061
_RS21915
BWI76_RS21920: BWI76_RS21920 - amino acid ABC transporter substrate-binding protein, at 4,580,068 to 4,580,284
_RS21920
BWI76_RS21925: BWI76_RS21925 - agmatinase, at 4,580,304 to 4,581,275
_RS21925
Position (kb) 4580
4581 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 4579.229 kb on + strand at 4579.405 kb on + strand, within BWI76_RS21915 at 4579.405 kb on + strand, within BWI76_RS21915 at 4579.660 kb on + strand, within BWI76_RS21915 at 4579.683 kb on - strand, within BWI76_RS21915 at 4579.991 kb on + strand at 4580.000 kb on + strand at 4580.073 kb on + strand at 4580.143 kb on - strand, within BWI76_RS21920 at 4580.145 kb on - strand, within BWI76_RS21920 at 4580.152 kb on + strand, within BWI76_RS21920 at 4580.152 kb on + strand, within BWI76_RS21920 at 4580.595 kb on + strand, within BWI76_RS21925 at 4580.630 kb on + strand, within BWI76_RS21925 at 4580.673 kb on + strand, within BWI76_RS21925 at 4580.673 kb on - strand, within BWI76_RS21925 at 4580.998 kb on + strand, within BWI76_RS21925 at 4581.154 kb on + strand, within BWI76_RS21925 at 4581.159 kb on + strand, within BWI76_RS21925 at 4581.167 kb on - strand, within BWI76_RS21925 at 4581.284 kb on + strand at 4581.284 kb on + strand at 4581.284 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Dictyostellum sp.mixed culture-1 remove 4,579,229 + +1.9 4,579,405 + BWI76_RS21915 0.17 +0.1 4,579,405 + BWI76_RS21915 0.17 +0.3 4,579,660 + BWI76_RS21915 0.49 -0.7 4,579,683 - BWI76_RS21915 0.52 -0.5 4,579,991 + +0.4 4,580,000 + +3.4 4,580,073 + -0.8 4,580,143 - BWI76_RS21920 0.35 -0.1 4,580,145 - BWI76_RS21920 0.35 -0.9 4,580,152 + BWI76_RS21920 0.39 -1.4 4,580,152 + BWI76_RS21920 0.39 -1.6 4,580,595 + BWI76_RS21925 0.30 -0.2 4,580,630 + BWI76_RS21925 0.34 -0.3 4,580,673 + BWI76_RS21925 0.38 +0.0 4,580,673 - BWI76_RS21925 0.38 -1.1 4,580,998 + BWI76_RS21925 0.71 -0.4 4,581,154 + BWI76_RS21925 0.87 -2.4 4,581,159 + BWI76_RS21925 0.88 -0.9 4,581,167 - BWI76_RS21925 0.89 -0.0 4,581,284 + +0.4 4,581,284 + +2.5 4,581,284 + -0.1
Or see this region's nucleotide sequence