Experiment: Dictyostellum sp.mixed culture-1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS21385 and BWI76_RS21390 are separated by 203 nucleotides BWI76_RS21390 and BWI76_RS21395 are separated by 69 nucleotides BWI76_RS21395 and BWI76_RS21400 are separated by 35 nucleotides
BWI76_RS21385: BWI76_RS21385 - tRNA/rRNA methyltransferase, at 4,476,385 to 4,477,458
_RS21385
BWI76_RS21390: BWI76_RS21390 - thiol disulfide reductase thioredoxin, at 4,477,662 to 4,478,087
_RS21390
BWI76_RS21395: BWI76_RS21395 - DTW domain-containing protein, at 4,478,157 to 4,478,855
_RS21395
BWI76_RS21400: BWI76_RS21400 - protein lysine acetyltransferase, at 4,478,891 to 4,481,569
_RS21400
Position (kb) 4478
4479 Strain fitness (log2 ratio) -2
-1
0
1
2 at 4477.205 kb on - strand, within BWI76_RS21385 at 4477.231 kb on - strand, within BWI76_RS21385 at 4477.368 kb on + strand at 4477.368 kb on + strand at 4477.376 kb on - strand at 4477.415 kb on + strand at 4477.566 kb on - strand at 4477.655 kb on - strand at 4477.689 kb on + strand at 4477.899 kb on + strand, within BWI76_RS21390 at 4477.936 kb on - strand, within BWI76_RS21390 at 4478.299 kb on - strand, within BWI76_RS21395 at 4478.651 kb on + strand, within BWI76_RS21395 at 4478.789 kb on + strand at 4478.813 kb on + strand at 4478.874 kb on + strand at 4479.064 kb on + strand at 4479.262 kb on + strand, within BWI76_RS21400 at 4479.267 kb on + strand, within BWI76_RS21400 at 4479.275 kb on - strand, within BWI76_RS21400 at 4479.437 kb on + strand, within BWI76_RS21400 at 4479.445 kb on - strand, within BWI76_RS21400 at 4479.520 kb on + strand, within BWI76_RS21400 at 4479.694 kb on + strand, within BWI76_RS21400
Per-strain Table
Position Strand Gene LocusTag Fraction Dictyostellum sp.mixed culture-1 remove 4,477,205 - BWI76_RS21385 0.76 -0.4 4,477,231 - BWI76_RS21385 0.79 +0.2 4,477,368 + -0.2 4,477,368 + -1.6 4,477,376 - +0.9 4,477,415 + +0.0 4,477,566 - -0.2 4,477,655 - +2.2 4,477,689 + +0.1 4,477,899 + BWI76_RS21390 0.56 +0.4 4,477,936 - BWI76_RS21390 0.64 +0.9 4,478,299 - BWI76_RS21395 0.20 -1.6 4,478,651 + BWI76_RS21395 0.71 -2.4 4,478,789 + +0.3 4,478,813 + -0.7 4,478,874 + +0.7 4,479,064 + -1.0 4,479,262 + BWI76_RS21400 0.14 -0.3 4,479,267 + BWI76_RS21400 0.14 +0.0 4,479,275 - BWI76_RS21400 0.14 -1.0 4,479,437 + BWI76_RS21400 0.20 +0.8 4,479,445 - BWI76_RS21400 0.21 -1.2 4,479,520 + BWI76_RS21400 0.23 +0.4 4,479,694 + BWI76_RS21400 0.30 -1.5
Or see this region's nucleotide sequence