Experiment: Dictyostellum sp.mixed culture-1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS20515 and BWI76_RS20520 overlap by 4 nucleotides BWI76_RS20520 and BWI76_RS20525 are separated by 176 nucleotides
BWI76_RS20515: BWI76_RS20515 - ion channel protein, at 4,296,297 to 4,297,532
_RS20515
BWI76_RS20520: BWI76_RS20520 - indolepyruvate decarboxylase, at 4,297,529 to 4,299,190
_RS20520
BWI76_RS20525: BWI76_RS20525 - glyceraldehyde 3-phosphate reductase, at 4,299,367 to 4,300,359
_RS20525
Position (kb)
4297
4298
4299
4300 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 4296.637 kb on + strand at 4296.645 kb on - strand, within BWI76_RS20515 at 4296.779 kb on - strand, within BWI76_RS20515 at 4296.955 kb on - strand, within BWI76_RS20515 at 4297.144 kb on - strand, within BWI76_RS20515 at 4297.176 kb on - strand, within BWI76_RS20515 at 4297.311 kb on - strand, within BWI76_RS20515 at 4297.557 kb on - strand at 4297.561 kb on + strand at 4297.626 kb on - strand at 4297.842 kb on - strand, within BWI76_RS20520 at 4297.905 kb on + strand, within BWI76_RS20520 at 4298.009 kb on - strand, within BWI76_RS20520 at 4298.265 kb on - strand, within BWI76_RS20520 at 4298.302 kb on + strand, within BWI76_RS20520 at 4298.302 kb on + strand, within BWI76_RS20520 at 4298.629 kb on + strand, within BWI76_RS20520 at 4298.672 kb on - strand, within BWI76_RS20520 at 4298.885 kb on - strand, within BWI76_RS20520 at 4298.905 kb on - strand, within BWI76_RS20520 at 4298.914 kb on - strand, within BWI76_RS20520 at 4299.045 kb on - strand at 4299.245 kb on + strand at 4299.253 kb on - strand at 4299.253 kb on - strand at 4299.253 kb on - strand at 4299.386 kb on - strand at 4299.756 kb on - strand, within BWI76_RS20525 at 4299.825 kb on + strand, within BWI76_RS20525 at 4299.979 kb on - strand, within BWI76_RS20525 at 4300.019 kb on + strand, within BWI76_RS20525
Per-strain Table
Position Strand Gene LocusTag Fraction Dictyostellum sp.mixed culture-1 remove 4,296,637 + +0.1 4,296,645 - BWI76_RS20515 0.28 -1.4 4,296,779 - BWI76_RS20515 0.39 +1.8 4,296,955 - BWI76_RS20515 0.53 -0.1 4,297,144 - BWI76_RS20515 0.69 -0.4 4,297,176 - BWI76_RS20515 0.71 -1.4 4,297,311 - BWI76_RS20515 0.82 -0.2 4,297,557 - -1.7 4,297,561 + -0.0 4,297,626 - +0.2 4,297,842 - BWI76_RS20520 0.19 -1.0 4,297,905 + BWI76_RS20520 0.23 +1.2 4,298,009 - BWI76_RS20520 0.29 -0.0 4,298,265 - BWI76_RS20520 0.44 +0.3 4,298,302 + BWI76_RS20520 0.47 +1.2 4,298,302 + BWI76_RS20520 0.47 -0.2 4,298,629 + BWI76_RS20520 0.66 +1.8 4,298,672 - BWI76_RS20520 0.69 +1.9 4,298,885 - BWI76_RS20520 0.82 +0.4 4,298,905 - BWI76_RS20520 0.83 -1.7 4,298,914 - BWI76_RS20520 0.83 -0.6 4,299,045 - -0.4 4,299,245 + -1.5 4,299,253 - +0.6 4,299,253 - +0.3 4,299,253 - -2.8 4,299,386 - -0.3 4,299,756 - BWI76_RS20525 0.39 +0.8 4,299,825 + BWI76_RS20525 0.46 +0.3 4,299,979 - BWI76_RS20525 0.62 +1.8 4,300,019 + BWI76_RS20525 0.66 -0.0
Or see this region's nucleotide sequence