Experiment: Dictyostellum sp.mixed culture-1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS17795 and BWI76_RS17800 are separated by 69 nucleotides BWI76_RS17800 and BWI76_RS17805 are separated by 175 nucleotides BWI76_RS17805 and BWI76_RS17810 are separated by 43 nucleotides
BWI76_RS17795: BWI76_RS17795 - ribonuclease D, at 3,697,932 to 3,699,059
_RS17795
BWI76_RS17800: BWI76_RS17800 - long-chain-fatty-acid--CoA ligase, at 3,699,129 to 3,700,847
_RS17800
BWI76_RS17805: BWI76_RS17805 - membrane protein, at 3,701,023 to 3,701,607
_RS17805
BWI76_RS17810: BWI76_RS17810 - tRNA N6-adenosine(37)-N6-threonylcarbamoyltransferase complex dimerization subunit TsaB, at 3,701,651 to 3,702,346
_RS17810
Position (kb)
3699
3700
3701 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 3698.670 kb on - strand, within BWI76_RS17795 at 3698.717 kb on - strand, within BWI76_RS17795 at 3698.939 kb on + strand, within BWI76_RS17795 at 3699.781 kb on - strand, within BWI76_RS17800 at 3699.888 kb on - strand, within BWI76_RS17800 at 3699.940 kb on - strand, within BWI76_RS17800 at 3700.104 kb on - strand, within BWI76_RS17800 at 3700.396 kb on - strand, within BWI76_RS17800 at 3700.497 kb on - strand, within BWI76_RS17800 at 3700.547 kb on + strand, within BWI76_RS17800 at 3700.716 kb on + strand at 3701.461 kb on - strand, within BWI76_RS17805
Per-strain Table
Position Strand Gene LocusTag Fraction Dictyostellum sp.mixed culture-1 remove 3,698,670 - BWI76_RS17795 0.65 -0.3 3,698,717 - BWI76_RS17795 0.70 -0.1 3,698,939 + BWI76_RS17795 0.89 +0.1 3,699,781 - BWI76_RS17800 0.38 +2.3 3,699,888 - BWI76_RS17800 0.44 -0.4 3,699,940 - BWI76_RS17800 0.47 -0.5 3,700,104 - BWI76_RS17800 0.57 +0.9 3,700,396 - BWI76_RS17800 0.74 +2.9 3,700,497 - BWI76_RS17800 0.80 -0.0 3,700,547 + BWI76_RS17800 0.82 +1.1 3,700,716 + -2.1 3,701,461 - BWI76_RS17805 0.75 +0.3
Or see this region's nucleotide sequence