Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS16910

Experiment: Dictyostellum sp.mixed culture-1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS16900 and BWI76_RS16905 overlap by 4 nucleotidesBWI76_RS16905 and BWI76_RS16910 overlap by 8 nucleotidesBWI76_RS16910 and BWI76_RS16915 are separated by 9 nucleotidesBWI76_RS16915 and BWI76_RS16920 are separated by 17 nucleotides BWI76_RS16900: BWI76_RS16900 - 4-hydroxy-2-oxovalerate aldolase, at 3,504,598 to 3,505,614 _RS16900 BWI76_RS16905: BWI76_RS16905 - acetaldehyde dehydrogenase (acetylating), at 3,505,611 to 3,506,561 _RS16905 BWI76_RS16910: BWI76_RS16910 - 2-keto-4-pentenoate hydratase, at 3,506,554 to 3,507,360 _RS16910 BWI76_RS16915: BWI76_RS16915 - alpha/beta hydrolase fold protein, at 3,507,370 to 3,508,236 _RS16915 BWI76_RS16920: BWI76_RS16920 - 3-(2,3-dihydroxyphenyl)propionate dioxygenase, at 3,508,254 to 3,509,198 _RS16920 Position (kb) 3506 3507 3508Strain fitness (log2 ratio) -1 0 1 2 3at 3506.110 kb on - strand, within BWI76_RS16905at 3506.206 kb on + strand, within BWI76_RS16905at 3506.232 kb on + strand, within BWI76_RS16905at 3506.287 kb on - strand, within BWI76_RS16905at 3506.575 kb on - strandat 3506.594 kb on - strandat 3506.986 kb on - strand, within BWI76_RS16910at 3507.250 kb on - strand, within BWI76_RS16910at 3507.409 kb on + strandat 3507.410 kb on - strandat 3507.823 kb on - strand, within BWI76_RS16915at 3507.854 kb on + strand, within BWI76_RS16915at 3508.140 kb on + strand, within BWI76_RS16915

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Per-strain Table

Position Strand Gene LocusTag Fraction Dictyostellum sp.mixed culture-1
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3,506,110 - BWI76_RS16905 0.52 +0.1
3,506,206 + BWI76_RS16905 0.63 +0.6
3,506,232 + BWI76_RS16905 0.65 +3.3
3,506,287 - BWI76_RS16905 0.71 +0.5
3,506,575 - +0.2
3,506,594 - -0.3
3,506,986 - BWI76_RS16910 0.54 -1.1
3,507,250 - BWI76_RS16910 0.86 +2.2
3,507,409 + +1.2
3,507,410 - -0.0
3,507,823 - BWI76_RS16915 0.52 -0.8
3,507,854 + BWI76_RS16915 0.56 -0.8
3,508,140 + BWI76_RS16915 0.89 -0.7

Or see this region's nucleotide sequence