Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS16165

Experiment: Dictyostellum sp.mixed culture-1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS16160 and BWI76_RS16165 are separated by 166 nucleotidesBWI76_RS16165 and BWI76_RS16170 overlap by 1 nucleotides BWI76_RS16160: BWI76_RS16160 - LysR family transcriptional regulator, at 3,351,952 to 3,352,860 _RS16160 BWI76_RS16165: BWI76_RS16165 - peptidase M20, at 3,353,027 to 3,354,337 _RS16165 BWI76_RS16170: BWI76_RS16170 - amidohydrolase, at 3,354,337 to 3,355,782 _RS16170 Position (kb) 3353 3354 3355Strain fitness (log2 ratio) -1 0 1 2 3 4 5at 3352.211 kb on + strand, within BWI76_RS16160at 3353.122 kb on + strandat 3353.211 kb on + strand, within BWI76_RS16165at 3353.271 kb on - strand, within BWI76_RS16165at 3353.544 kb on - strand, within BWI76_RS16165at 3353.690 kb on + strand, within BWI76_RS16165at 3353.833 kb on - strand, within BWI76_RS16165at 3354.553 kb on - strand, within BWI76_RS16170at 3355.081 kb on + strand, within BWI76_RS16170at 3355.197 kb on - strand, within BWI76_RS16170

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Per-strain Table

Position Strand Gene LocusTag Fraction Dictyostellum sp.mixed culture-1
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3,352,211 + BWI76_RS16160 0.28 -0.6
3,353,122 + +2.3
3,353,211 + BWI76_RS16165 0.14 +0.2
3,353,271 - BWI76_RS16165 0.19 +5.3
3,353,544 - BWI76_RS16165 0.39 -0.7
3,353,690 + BWI76_RS16165 0.51 +0.2
3,353,833 - BWI76_RS16165 0.61 -0.1
3,354,553 - BWI76_RS16170 0.15 +0.4
3,355,081 + BWI76_RS16170 0.51 +1.0
3,355,197 - BWI76_RS16170 0.59 -1.0

Or see this region's nucleotide sequence