Experiment: Dictyostellum sp.mixed culture-1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS15970 and BWI76_RS15975 are separated by 176 nucleotides BWI76_RS15975 and BWI76_RS15980 are separated by 149 nucleotides BWI76_RS15980 and BWI76_RS15985 overlap by 20 nucleotides BWI76_RS15985 and BWI76_RS15990 are separated by 577 nucleotides
BWI76_RS15970: BWI76_RS15970 - carboxypeptidase M32, at 3,313,078 to 3,314,565
_RS15970
BWI76_RS15975: BWI76_RS15975 - hypothetical protein, at 3,314,742 to 3,315,167
_RS15975
BWI76_RS15980: BWI76_RS15980 - lysine transporter LysE, at 3,315,317 to 3,315,579
_RS15980
BWI76_RS15985: BWI76_RS15985 - LysR family transcriptional regulator, at 3,315,560 to 3,315,784
_RS15985
BWI76_RS15990: BWI76_RS15990 - serine protease, at 3,316,362 to 3,317,174
_RS15990
Position (kb)
3315
3316 Strain fitness (log2 ratio)
-1
0
1 at 3314.645 kb on + strand at 3314.730 kb on + strand at 3314.782 kb on - strand at 3314.982 kb on + strand, within BWI76_RS15975 at 3315.261 kb on - strand at 3315.433 kb on - strand, within BWI76_RS15980 at 3315.584 kb on + strand, within BWI76_RS15985 at 3315.602 kb on + strand, within BWI76_RS15985 at 3315.610 kb on - strand, within BWI76_RS15985 at 3315.746 kb on - strand, within BWI76_RS15985 at 3315.951 kb on + strand at 3315.968 kb on - strand at 3316.079 kb on - strand at 3316.079 kb on - strand at 3316.364 kb on + strand at 3316.364 kb on + strand at 3316.372 kb on - strand at 3316.415 kb on + strand at 3316.540 kb on - strand, within BWI76_RS15990
Per-strain Table
Position Strand Gene LocusTag Fraction Dictyostellum sp.mixed culture-1 remove 3,314,645 + -0.5 3,314,730 + +0.3 3,314,782 - -0.2 3,314,982 + BWI76_RS15975 0.56 -0.4 3,315,261 - -0.0 3,315,433 - BWI76_RS15980 0.44 -1.0 3,315,584 + BWI76_RS15985 0.11 +0.1 3,315,602 + BWI76_RS15985 0.19 -1.6 3,315,610 - BWI76_RS15985 0.22 +0.1 3,315,746 - BWI76_RS15985 0.83 -0.3 3,315,951 + +1.2 3,315,968 - +0.1 3,316,079 - +0.1 3,316,079 - -0.3 3,316,364 + +1.2 3,316,364 + -0.2 3,316,372 - +0.1 3,316,415 + +1.0 3,316,540 - BWI76_RS15990 0.22 +0.2
Or see this region's nucleotide sequence