Experiment: Dictyostellum sp.mixed culture-1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS14610 and BWI76_RS14615 are separated by 13 nucleotides BWI76_RS14615 and BWI76_RS14620 overlap by 1 nucleotides BWI76_RS14620 and BWI76_RS14625 are separated by 171 nucleotides BWI76_RS14625 and BWI76_RS14630 are separated by 51 nucleotides
BWI76_RS14610: BWI76_RS14610 - putative hydrolase, at 3,066,465 to 3,067,544
_RS14610
BWI76_RS14615: BWI76_RS14615 - hypothetical protein, at 3,067,558 to 3,068,313
_RS14615
BWI76_RS14620: BWI76_RS14620 - acetylornithine deacetylase or succinyl-diaminopimelate desuccinylase, at 3,068,313 to 3,069,425
_RS14620
BWI76_RS14625: BWI76_RS14625 - protein TolA, at 3,069,597 to 3,070,025
_RS14625
BWI76_RS14630: BWI76_RS14630 - TonB-dependent receptor, at 3,070,077 to 3,072,041
_RS14630
Position (kb)
3068
3069
3070 Strain fitness (log2 ratio)
-1
0
1 at 3067.315 kb on - strand, within BWI76_RS14610 at 3067.504 kb on - strand at 3067.587 kb on + strand at 3067.587 kb on + strand at 3067.595 kb on - strand at 3067.796 kb on + strand, within BWI76_RS14615 at 3068.897 kb on + strand, within BWI76_RS14620 at 3069.389 kb on + strand at 3069.850 kb on - strand, within BWI76_RS14625 at 3070.008 kb on - strand at 3070.193 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Dictyostellum sp.mixed culture-1 remove 3,067,315 - BWI76_RS14610 0.79 +0.2 3,067,504 - +0.2 3,067,587 + -0.2 3,067,587 + -1.5 3,067,595 - -0.2 3,067,796 + BWI76_RS14615 0.31 -0.1 3,068,897 + BWI76_RS14620 0.52 +1.1 3,069,389 + -0.2 3,069,850 - BWI76_RS14625 0.59 +0.4 3,070,008 - +0.8 3,070,193 + +0.3
Or see this region's nucleotide sequence