Experiment: Dictyostellum sp.mixed culture-1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS14485 and BWI76_RS14490 overlap by 4 nucleotides BWI76_RS14490 and BWI76_RS14495 are separated by 134 nucleotides BWI76_RS14495 and BWI76_RS14500 are separated by 32 nucleotides
BWI76_RS14485: BWI76_RS14485 - two-component sensor histidine kinase, at 3,023,414 to 3,025,423
_RS14485
BWI76_RS14490: BWI76_RS14490 - ABC transporter substrate-binding protein, at 3,025,420 to 3,026,691
_RS14490
BWI76_RS14495: BWI76_RS14495 - hypothetical protein, at 3,026,826 to 3,027,014
_RS14495
BWI76_RS14500: BWI76_RS14500 - MFS transporter, at 3,027,047 to 3,028,438
_RS14500
Position (kb)
3025
3026
3027 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 3024.910 kb on + strand at 3025.108 kb on - strand, within BWI76_RS14485 at 3025.153 kb on + strand, within BWI76_RS14485 at 3025.161 kb on - strand, within BWI76_RS14485 at 3025.502 kb on + strand at 3025.573 kb on + strand at 3025.842 kb on + strand, within BWI76_RS14490 at 3026.051 kb on - strand, within BWI76_RS14490 at 3026.114 kb on - strand, within BWI76_RS14490 at 3026.237 kb on + strand, within BWI76_RS14490 at 3026.588 kb on - strand at 3026.672 kb on - strand at 3026.711 kb on + strand at 3026.722 kb on + strand at 3026.731 kb on - strand at 3027.016 kb on + strand at 3027.110 kb on + strand at 3027.126 kb on + strand at 3027.157 kb on - strand at 3027.159 kb on + strand at 3027.168 kb on + strand at 3027.173 kb on + strand at 3027.176 kb on - strand at 3027.176 kb on - strand at 3027.176 kb on - strand at 3027.186 kb on + strand at 3027.193 kb on - strand, within BWI76_RS14500 at 3027.196 kb on + strand, within BWI76_RS14500 at 3027.196 kb on + strand, within BWI76_RS14500 at 3027.196 kb on + strand, within BWI76_RS14500 at 3027.204 kb on - strand, within BWI76_RS14500 at 3027.204 kb on - strand, within BWI76_RS14500 at 3027.204 kb on - strand, within BWI76_RS14500 at 3027.204 kb on - strand, within BWI76_RS14500 at 3027.204 kb on - strand, within BWI76_RS14500 at 3027.204 kb on - strand, within BWI76_RS14500 at 3027.218 kb on + strand, within BWI76_RS14500 at 3027.258 kb on + strand, within BWI76_RS14500 at 3027.258 kb on + strand, within BWI76_RS14500 at 3027.266 kb on - strand, within BWI76_RS14500 at 3027.301 kb on - strand, within BWI76_RS14500 at 3027.319 kb on - strand, within BWI76_RS14500 at 3027.353 kb on - strand, within BWI76_RS14500 at 3027.429 kb on - strand, within BWI76_RS14500 at 3027.441 kb on - strand, within BWI76_RS14500 at 3027.675 kb on - strand, within BWI76_RS14500
Per-strain Table
Position Strand Gene LocusTag Fraction Dictyostellum sp.mixed culture-1 remove 3,024,910 + -1.3 3,025,108 - BWI76_RS14485 0.84 +0.3 3,025,153 + BWI76_RS14485 0.87 -0.2 3,025,161 - BWI76_RS14485 0.87 +0.2 3,025,502 + -1.9 3,025,573 + +0.8 3,025,842 + BWI76_RS14490 0.33 -2.7 3,026,051 - BWI76_RS14490 0.50 -1.0 3,026,114 - BWI76_RS14490 0.55 -0.5 3,026,237 + BWI76_RS14490 0.64 -0.8 3,026,588 - -2.0 3,026,672 - -0.4 3,026,711 + +0.1 3,026,722 + -1.4 3,026,731 - +0.6 3,027,016 + +1.2 3,027,110 + +2.5 3,027,126 + -2.6 3,027,157 - -0.0 3,027,159 + -1.2 3,027,168 + +0.2 3,027,173 + -0.8 3,027,176 - +0.4 3,027,176 - +0.5 3,027,176 - -1.3 3,027,186 + -0.8 3,027,193 - BWI76_RS14500 0.10 +0.1 3,027,196 + BWI76_RS14500 0.11 -0.4 3,027,196 + BWI76_RS14500 0.11 +0.6 3,027,196 + BWI76_RS14500 0.11 +2.1 3,027,204 - BWI76_RS14500 0.11 +0.1 3,027,204 - BWI76_RS14500 0.11 -0.6 3,027,204 - BWI76_RS14500 0.11 -1.4 3,027,204 - BWI76_RS14500 0.11 -1.5 3,027,204 - BWI76_RS14500 0.11 +0.8 3,027,204 - BWI76_RS14500 0.11 +1.7 3,027,218 + BWI76_RS14500 0.12 -0.8 3,027,258 + BWI76_RS14500 0.15 +0.4 3,027,258 + BWI76_RS14500 0.15 -0.1 3,027,266 - BWI76_RS14500 0.16 -1.3 3,027,301 - BWI76_RS14500 0.18 +0.2 3,027,319 - BWI76_RS14500 0.20 -2.5 3,027,353 - BWI76_RS14500 0.22 +1.3 3,027,429 - BWI76_RS14500 0.27 +0.5 3,027,441 - BWI76_RS14500 0.28 +0.6 3,027,675 - BWI76_RS14500 0.45 +0.0
Or see this region's nucleotide sequence