Experiment: Dictyostellum sp.mixed culture-1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS14210 and BWI76_RS14215 are separated by 235 nucleotides BWI76_RS14215 and BWI76_RS14220 are separated by 21 nucleotides BWI76_RS14220 and BWI76_RS14225 are separated by 53 nucleotides BWI76_RS14225 and BWI76_RS14230 overlap by 1 nucleotides
BWI76_RS14210: BWI76_RS14210 - LysR family transcriptional regulator, at 2,974,662 to 2,975,624
_RS14210
BWI76_RS14215: BWI76_RS14215 - hypothetical protein, at 2,975,860 to 2,976,141
_RS14215
BWI76_RS14220: BWI76_RS14220 - hypothetical protein, at 2,976,163 to 2,976,504
_RS14220
BWI76_RS14225: BWI76_RS14225 - anti-ECF sigma factor ChrR, at 2,976,558 to 2,977,229
_RS14225
BWI76_RS14230: BWI76_RS14230 - flavin monoamine oxidase family protein, at 2,977,229 to 2,978,218
_RS14230
Position (kb)
2976
2977
2978 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 2975.969 kb on + strand, within BWI76_RS14215 at 2975.970 kb on - strand, within BWI76_RS14215 at 2975.998 kb on - strand, within BWI76_RS14215 at 2976.025 kb on - strand, within BWI76_RS14215 at 2976.097 kb on + strand, within BWI76_RS14215 at 2976.097 kb on + strand, within BWI76_RS14215 at 2976.110 kb on + strand, within BWI76_RS14215 at 2976.123 kb on + strand at 2976.133 kb on - strand at 2976.672 kb on + strand, within BWI76_RS14225 at 2976.680 kb on - strand, within BWI76_RS14225 at 2977.381 kb on + strand, within BWI76_RS14230 at 2977.774 kb on + strand, within BWI76_RS14230 at 2977.774 kb on + strand, within BWI76_RS14230 at 2977.818 kb on - strand, within BWI76_RS14230 at 2977.994 kb on + strand, within BWI76_RS14230
Per-strain Table
Position Strand Gene LocusTag Fraction Dictyostellum sp.mixed culture-1 remove 2,975,969 + BWI76_RS14215 0.39 -1.8 2,975,970 - BWI76_RS14215 0.39 -1.1 2,975,998 - BWI76_RS14215 0.49 -1.8 2,976,025 - BWI76_RS14215 0.59 -3.0 2,976,097 + BWI76_RS14215 0.84 +0.3 2,976,097 + BWI76_RS14215 0.84 -0.3 2,976,110 + BWI76_RS14215 0.89 +1.0 2,976,123 + +0.1 2,976,133 - -1.1 2,976,672 + BWI76_RS14225 0.17 +1.3 2,976,680 - BWI76_RS14225 0.18 +1.6 2,977,381 + BWI76_RS14230 0.15 -0.1 2,977,774 + BWI76_RS14230 0.55 +1.4 2,977,774 + BWI76_RS14230 0.55 -0.2 2,977,818 - BWI76_RS14230 0.59 +0.5 2,977,994 + BWI76_RS14230 0.77 +0.6
Or see this region's nucleotide sequence