Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS08940

Experiment: Dictyostellum sp.mixed culture-1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS08930 and BWI76_RS08935 are separated by 285 nucleotidesBWI76_RS08935 and BWI76_RS08940 are separated by 68 nucleotidesBWI76_RS08940 and BWI76_RS08945 are separated by 45 nucleotides BWI76_RS08930: BWI76_RS08930 - hypothetical protein, at 1,881,754 to 1,882,014 _RS08930 BWI76_RS08935: BWI76_RS08935 - hypothetical protein, at 1,882,300 to 1,882,566 _RS08935 BWI76_RS08940: BWI76_RS08940 - PKHD-type hydroxylase, at 1,882,635 to 1,883,312 _RS08940 BWI76_RS08945: BWI76_RS08945 - catecholate siderophore receptor Fiu, at 1,883,358 to 1,885,646 _RS08945 Position (kb) 1882 1883 1884Strain fitness (log2 ratio) -1 0 1 2at 1881.706 kb on + strandat 1881.727 kb on - strandat 1881.768 kb on + strandat 1882.032 kb on - strandat 1882.034 kb on + strandat 1882.034 kb on + strandat 1882.211 kb on + strandat 1882.571 kb on - strandat 1882.576 kb on + strandat 1882.589 kb on + strandat 1882.591 kb on + strandat 1882.661 kb on + strandat 1882.839 kb on + strand, within BWI76_RS08940at 1882.898 kb on + strand, within BWI76_RS08940at 1883.066 kb on - strand, within BWI76_RS08940at 1883.139 kb on + strand, within BWI76_RS08940at 1883.152 kb on + strand, within BWI76_RS08940at 1883.177 kb on - strand, within BWI76_RS08940at 1883.457 kb on - strandat 1883.539 kb on + strandat 1883.685 kb on + strand, within BWI76_RS08945at 1883.730 kb on + strand, within BWI76_RS08945at 1883.954 kb on + strand, within BWI76_RS08945

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Per-strain Table

Position Strand Gene LocusTag Fraction Dictyostellum sp.mixed culture-1
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1,881,706 + -0.1
1,881,727 - -0.4
1,881,768 + +2.1
1,882,032 - -1.1
1,882,034 + -0.3
1,882,034 + -1.5
1,882,211 + +0.5
1,882,571 - +0.3
1,882,576 + +1.6
1,882,589 + +0.3
1,882,591 + -0.8
1,882,661 + +0.2
1,882,839 + BWI76_RS08940 0.30 +0.4
1,882,898 + BWI76_RS08940 0.39 -0.1
1,883,066 - BWI76_RS08940 0.64 -0.3
1,883,139 + BWI76_RS08940 0.74 -0.3
1,883,152 + BWI76_RS08940 0.76 +1.1
1,883,177 - BWI76_RS08940 0.80 -0.2
1,883,457 - -0.4
1,883,539 + -1.5
1,883,685 + BWI76_RS08945 0.14 +0.6
1,883,730 + BWI76_RS08945 0.16 -0.1
1,883,954 + BWI76_RS08945 0.26 +0.9

Or see this region's nucleotide sequence