Experiment: Dictyostellum sp.mixed culture-1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS08535 and BWI76_RS08540 are separated by 34 nucleotides BWI76_RS08540 and BWI76_RS08545 are separated by 9 nucleotides BWI76_RS08545 and BWI76_RS08550 are separated by 162 nucleotides BWI76_RS08550 and BWI76_RS08555 are separated by 26 nucleotides BWI76_RS08555 and BWI76_RS08560 are separated by 3 nucleotides BWI76_RS08560 and BWI76_RS08565 are separated by 144 nucleotides BWI76_RS08565 and BWI76_RS08570 are separated by 35 nucleotides
BWI76_RS08535: BWI76_RS08535 - translocation protein TolB, at 1,806,484 to 1,807,776
_RS08535
BWI76_RS08540: BWI76_RS08540 - hypothetical protein, at 1,807,811 to 1,808,335
_RS08540
BWI76_RS08545: BWI76_RS08545 - cell division protein CpoB, at 1,808,345 to 1,809,130
_RS08545
BWI76_RS08550: BWI76_RS08550 - tRNA-Lys, at 1,809,293 to 1,809,368
_RS08550
BWI76_RS08555: BWI76_RS08555 - tRNA-Val, at 1,809,395 to 1,809,470
_RS08555
BWI76_RS08560: BWI76_RS08560 - tRNA-Lys, at 1,809,474 to 1,809,549
_RS08560
BWI76_RS08565: BWI76_RS08565 - tRNA-Lys, at 1,809,694 to 1,809,769
_RS08565
BWI76_RS08570: BWI76_RS08570 - tRNA-Lys, at 1,809,805 to 1,809,880
_RS08570
Position (kb)
1808
1809
1810 Strain fitness (log2 ratio)
-2
-1
0
1 at 1807.741 kb on - strand at 1807.756 kb on + strand at 1808.154 kb on - strand, within BWI76_RS08540 at 1808.166 kb on + strand, within BWI76_RS08540 at 1808.797 kb on + strand, within BWI76_RS08545 at 1808.892 kb on - strand, within BWI76_RS08545 at 1809.582 kb on + strand at 1810.013 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Dictyostellum sp.mixed culture-1 remove 1,807,741 - -2.1 1,807,756 + -0.2 1,808,154 - BWI76_RS08540 0.65 +0.9 1,808,166 + BWI76_RS08540 0.68 -1.3 1,808,797 + BWI76_RS08545 0.58 -0.6 1,808,892 - BWI76_RS08545 0.70 -1.5 1,809,582 + +0.4 1,810,013 + -0.1
Or see this region's nucleotide sequence