Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS08545

Experiment: Dictyostellum sp.mixed culture-1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS08535 and BWI76_RS08540 are separated by 34 nucleotidesBWI76_RS08540 and BWI76_RS08545 are separated by 9 nucleotidesBWI76_RS08545 and BWI76_RS08550 are separated by 162 nucleotidesBWI76_RS08550 and BWI76_RS08555 are separated by 26 nucleotidesBWI76_RS08555 and BWI76_RS08560 are separated by 3 nucleotidesBWI76_RS08560 and BWI76_RS08565 are separated by 144 nucleotidesBWI76_RS08565 and BWI76_RS08570 are separated by 35 nucleotides BWI76_RS08535: BWI76_RS08535 - translocation protein TolB, at 1,806,484 to 1,807,776 _RS08535 BWI76_RS08540: BWI76_RS08540 - hypothetical protein, at 1,807,811 to 1,808,335 _RS08540 BWI76_RS08545: BWI76_RS08545 - cell division protein CpoB, at 1,808,345 to 1,809,130 _RS08545 BWI76_RS08550: BWI76_RS08550 - tRNA-Lys, at 1,809,293 to 1,809,368 _RS08550 BWI76_RS08555: BWI76_RS08555 - tRNA-Val, at 1,809,395 to 1,809,470 _RS08555 BWI76_RS08560: BWI76_RS08560 - tRNA-Lys, at 1,809,474 to 1,809,549 _RS08560 BWI76_RS08565: BWI76_RS08565 - tRNA-Lys, at 1,809,694 to 1,809,769 _RS08565 BWI76_RS08570: BWI76_RS08570 - tRNA-Lys, at 1,809,805 to 1,809,880 _RS08570 Position (kb) 1808 1809 1810Strain fitness (log2 ratio) -2 -1 0 1at 1807.741 kb on - strandat 1807.756 kb on + strandat 1808.154 kb on - strand, within BWI76_RS08540at 1808.166 kb on + strand, within BWI76_RS08540at 1808.797 kb on + strand, within BWI76_RS08545at 1808.892 kb on - strand, within BWI76_RS08545at 1809.582 kb on + strandat 1810.013 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Dictyostellum sp.mixed culture-1
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1,807,741 - -2.1
1,807,756 + -0.2
1,808,154 - BWI76_RS08540 0.65 +0.9
1,808,166 + BWI76_RS08540 0.68 -1.3
1,808,797 + BWI76_RS08545 0.58 -0.6
1,808,892 - BWI76_RS08545 0.70 -1.5
1,809,582 + +0.4
1,810,013 + -0.1

Or see this region's nucleotide sequence