Experiment: Dictyostellum sp.mixed culture-1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS07560 and BWI76_RS07565 are separated by 308 nucleotides BWI76_RS07565 and BWI76_RS07570 are separated by 24 nucleotides
BWI76_RS07560: BWI76_RS07560 - aminotransferase regulator domain-containing protein, at 1,600,675 to 1,602,009
_RS07560
BWI76_RS07565: BWI76_RS07565 - LysE type translocator family protein, at 1,602,318 to 1,602,959
_RS07565
BWI76_RS07570: BWI76_RS07570 - GntR family transcriptional regulator with, at 1,602,984 to 1,604,450
_RS07570
Position (kb)
1602
1603 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 1601.352 kb on - strand, within BWI76_RS07560 at 1601.471 kb on - strand, within BWI76_RS07560 at 1601.634 kb on + strand, within BWI76_RS07560 at 1601.634 kb on + strand, within BWI76_RS07560 at 1601.689 kb on + strand, within BWI76_RS07560 at 1601.805 kb on + strand, within BWI76_RS07560 at 1601.813 kb on - strand, within BWI76_RS07560 at 1601.941 kb on + strand at 1601.970 kb on - strand at 1602.055 kb on + strand at 1602.233 kb on + strand at 1602.290 kb on + strand at 1602.290 kb on + strand at 1602.298 kb on - strand at 1602.298 kb on - strand at 1602.308 kb on - strand at 1602.334 kb on + strand at 1602.395 kb on + strand, within BWI76_RS07565 at 1602.419 kb on + strand, within BWI76_RS07565 at 1602.445 kb on - strand, within BWI76_RS07565 at 1602.457 kb on + strand, within BWI76_RS07565 at 1602.463 kb on + strand, within BWI76_RS07565 at 1602.773 kb on + strand, within BWI76_RS07565 at 1602.773 kb on + strand, within BWI76_RS07565 at 1602.781 kb on - strand, within BWI76_RS07565 at 1602.802 kb on - strand, within BWI76_RS07565 at 1602.821 kb on - strand, within BWI76_RS07565 at 1602.835 kb on + strand, within BWI76_RS07565 at 1603.016 kb on + strand at 1603.158 kb on - strand, within BWI76_RS07570 at 1603.162 kb on + strand, within BWI76_RS07570 at 1603.275 kb on - strand, within BWI76_RS07570 at 1603.376 kb on + strand, within BWI76_RS07570 at 1603.400 kb on - strand, within BWI76_RS07570 at 1603.631 kb on - strand, within BWI76_RS07570
Per-strain Table
Position Strand Gene LocusTag Fraction Dictyostellum sp.mixed culture-1 remove 1,601,352 - BWI76_RS07560 0.51 -0.4 1,601,471 - BWI76_RS07560 0.60 -0.5 1,601,634 + BWI76_RS07560 0.72 -0.5 1,601,634 + BWI76_RS07560 0.72 -0.7 1,601,689 + BWI76_RS07560 0.76 +0.7 1,601,805 + BWI76_RS07560 0.85 -0.8 1,601,813 - BWI76_RS07560 0.85 -0.4 1,601,941 + -0.4 1,601,970 - +0.1 1,602,055 + -0.7 1,602,233 + -0.3 1,602,290 + +0.0 1,602,290 + +0.1 1,602,298 - -0.1 1,602,298 - +0.9 1,602,308 - -0.0 1,602,334 + -1.0 1,602,395 + BWI76_RS07565 0.12 -0.1 1,602,419 + BWI76_RS07565 0.16 +1.0 1,602,445 - BWI76_RS07565 0.20 -1.8 1,602,457 + BWI76_RS07565 0.22 +0.8 1,602,463 + BWI76_RS07565 0.23 +1.0 1,602,773 + BWI76_RS07565 0.71 +2.6 1,602,773 + BWI76_RS07565 0.71 -0.5 1,602,781 - BWI76_RS07565 0.72 +1.6 1,602,802 - BWI76_RS07565 0.75 +0.2 1,602,821 - BWI76_RS07565 0.78 -0.3 1,602,835 + BWI76_RS07565 0.81 -0.3 1,603,016 + +0.1 1,603,158 - BWI76_RS07570 0.12 -0.2 1,603,162 + BWI76_RS07570 0.12 +0.1 1,603,275 - BWI76_RS07570 0.20 +0.5 1,603,376 + BWI76_RS07570 0.27 -0.1 1,603,400 - BWI76_RS07570 0.28 +0.6 1,603,631 - BWI76_RS07570 0.44 +1.3
Or see this region's nucleotide sequence