Experiment: Dictyostellum sp.mixed culture-1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS03775 and BWI76_RS03780 are separated by 89 nucleotides BWI76_RS03780 and BWI76_RS03785 are separated by 46 nucleotides BWI76_RS03785 and BWI76_RS03790 are separated by 82 nucleotides BWI76_RS03790 and BWI76_RS03795 are separated by 178 nucleotides
BWI76_RS03775: BWI76_RS03775 - ricin B lectin, at 782,257 to 782,691
_RS03775
BWI76_RS03780: BWI76_RS03780 - threonine transporter RhtB, at 782,781 to 783,422
_RS03780
BWI76_RS03785: BWI76_RS03785 - AraC family transcriptional regulator, at 783,469 to 784,284
_RS03785
BWI76_RS03790: BWI76_RS03790 - hypothetical protein, at 784,367 to 784,822
_RS03790
BWI76_RS03795: BWI76_RS03795 - putative aldehyde dehydrogenase, at 785,001 to 786,371
_RS03795
Position (kb) 783
784
785 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 782.482 kb on - strand, within BWI76_RS03775 at 782.485 kb on + strand, within BWI76_RS03775 at 782.489 kb on - strand, within BWI76_RS03775 at 782.490 kb on + strand, within BWI76_RS03775 at 782.490 kb on + strand, within BWI76_RS03775 at 782.498 kb on - strand, within BWI76_RS03775 at 782.512 kb on + strand, within BWI76_RS03775 at 782.512 kb on + strand, within BWI76_RS03775 at 782.512 kb on + strand, within BWI76_RS03775 at 782.512 kb on + strand, within BWI76_RS03775 at 782.512 kb on + strand, within BWI76_RS03775 at 782.512 kb on + strand, within BWI76_RS03775 at 782.512 kb on + strand, within BWI76_RS03775 at 782.512 kb on + strand, within BWI76_RS03775 at 782.512 kb on + strand, within BWI76_RS03775 at 782.512 kb on + strand, within BWI76_RS03775 at 782.512 kb on + strand, within BWI76_RS03775 at 782.512 kb on + strand, within BWI76_RS03775 at 782.512 kb on + strand, within BWI76_RS03775 at 782.520 kb on - strand, within BWI76_RS03775 at 782.520 kb on - strand, within BWI76_RS03775 at 782.520 kb on - strand, within BWI76_RS03775 at 782.520 kb on - strand, within BWI76_RS03775 at 782.520 kb on - strand, within BWI76_RS03775 at 782.520 kb on - strand, within BWI76_RS03775 at 782.520 kb on - strand, within BWI76_RS03775 at 782.520 kb on - strand, within BWI76_RS03775 at 782.520 kb on - strand, within BWI76_RS03775 at 782.563 kb on + strand, within BWI76_RS03775 at 782.563 kb on + strand, within BWI76_RS03775 at 782.566 kb on - strand, within BWI76_RS03775 at 782.571 kb on + strand, within BWI76_RS03775 at 782.571 kb on - strand, within BWI76_RS03775 at 782.573 kb on + strand at 782.573 kb on + strand, within BWI76_RS03775 at 782.573 kb on + strand, within BWI76_RS03775 at 782.580 kb on + strand, within BWI76_RS03775 at 782.580 kb on + strand, within BWI76_RS03775 at 782.581 kb on - strand, within BWI76_RS03775 at 782.581 kb on - strand, within BWI76_RS03775 at 782.581 kb on - strand, within BWI76_RS03775 at 782.582 kb on - strand, within BWI76_RS03775 at 782.585 kb on + strand, within BWI76_RS03775 at 782.590 kb on + strand, within BWI76_RS03775 at 782.590 kb on + strand, within BWI76_RS03775 at 782.611 kb on - strand, within BWI76_RS03775 at 782.611 kb on - strand, within BWI76_RS03775 at 782.627 kb on + strand, within BWI76_RS03775 at 782.635 kb on - strand, within BWI76_RS03775 at 782.635 kb on - strand, within BWI76_RS03775 at 782.643 kb on + strand, within BWI76_RS03775 at 782.645 kb on + strand, within BWI76_RS03775 at 782.651 kb on - strand at 782.651 kb on - strand at 782.660 kb on + strand at 782.732 kb on + strand at 782.742 kb on + strand at 782.751 kb on + strand at 782.751 kb on + strand at 782.751 kb on + strand at 782.752 kb on + strand at 782.752 kb on + strand at 782.752 kb on + strand at 782.752 kb on + strand at 782.752 kb on + strand at 782.752 kb on + strand at 782.752 kb on + strand at 782.752 kb on + strand at 782.752 kb on + strand at 782.752 kb on + strand at 782.752 kb on + strand at 782.752 kb on + strand at 782.752 kb on + strand at 782.752 kb on + strand at 782.752 kb on + strand at 782.752 kb on + strand at 782.752 kb on + strand at 782.752 kb on + strand at 782.752 kb on + strand at 782.754 kb on - strand at 782.757 kb on + strand at 782.759 kb on - strand at 782.760 kb on - strand at 782.760 kb on - strand at 782.760 kb on - strand at 782.760 kb on - strand at 782.760 kb on - strand at 782.760 kb on - strand at 782.760 kb on - strand at 782.760 kb on - strand at 782.760 kb on - strand at 782.760 kb on - strand at 782.760 kb on - strand at 782.788 kb on + strand at 782.801 kb on + strand at 782.821 kb on + strand at 782.828 kb on + strand at 782.828 kb on + strand at 782.828 kb on + strand at 782.828 kb on + strand at 782.828 kb on + strand at 782.828 kb on + strand at 782.828 kb on + strand at 782.828 kb on + strand at 782.828 kb on + strand at 782.828 kb on + strand at 782.832 kb on + strand at 782.832 kb on + strand at 782.832 kb on + strand at 782.832 kb on + strand at 782.836 kb on - strand at 782.836 kb on - strand at 782.836 kb on - strand at 782.836 kb on - strand at 782.836 kb on - strand at 782.836 kb on - strand at 782.836 kb on - strand at 782.836 kb on - strand at 782.836 kb on - strand at 782.836 kb on - strand at 782.836 kb on - strand at 782.836 kb on - strand at 782.840 kb on - strand at 782.840 kb on - strand at 782.840 kb on - strand at 782.841 kb on - strand at 782.847 kb on - strand, within BWI76_RS03780 at 782.852 kb on - strand, within BWI76_RS03780 at 782.856 kb on + strand, within BWI76_RS03780 at 782.857 kb on - strand, within BWI76_RS03780 at 782.862 kb on - strand, within BWI76_RS03780 at 782.877 kb on + strand, within BWI76_RS03780 at 782.882 kb on + strand, within BWI76_RS03780 at 782.882 kb on + strand, within BWI76_RS03780 at 782.882 kb on + strand, within BWI76_RS03780 at 782.884 kb on + strand, within BWI76_RS03780 at 782.884 kb on + strand, within BWI76_RS03780 at 782.885 kb on - strand, within BWI76_RS03780 at 782.889 kb on + strand, within BWI76_RS03780 at 782.892 kb on - strand, within BWI76_RS03780 at 782.892 kb on - strand, within BWI76_RS03780 at 782.892 kb on - strand, within BWI76_RS03780 at 782.893 kb on + strand, within BWI76_RS03780 at 782.902 kb on + strand, within BWI76_RS03780 at 782.910 kb on + strand, within BWI76_RS03780 at 782.920 kb on + strand, within BWI76_RS03780 at 782.928 kb on - strand, within BWI76_RS03780 at 782.974 kb on + strand, within BWI76_RS03780 at 783.013 kb on + strand, within BWI76_RS03780 at 783.013 kb on + strand, within BWI76_RS03780 at 783.013 kb on + strand, within BWI76_RS03780 at 783.021 kb on - strand, within BWI76_RS03780 at 783.021 kb on - strand, within BWI76_RS03780 at 783.021 kb on - strand, within BWI76_RS03780 at 783.108 kb on - strand, within BWI76_RS03780 at 783.108 kb on - strand, within BWI76_RS03780 at 783.177 kb on - strand, within BWI76_RS03780 at 783.271 kb on + strand, within BWI76_RS03780 at 783.299 kb on + strand, within BWI76_RS03780 at 783.313 kb on + strand, within BWI76_RS03780 at 783.321 kb on - strand, within BWI76_RS03780 at 783.346 kb on + strand, within BWI76_RS03780 at 783.346 kb on + strand, within BWI76_RS03780 at 783.351 kb on + strand, within BWI76_RS03780 at 783.396 kb on + strand at 783.411 kb on + strand at 783.440 kb on + strand at 783.441 kb on - strand at 783.444 kb on + strand at 783.450 kb on + strand at 783.450 kb on + strand at 783.450 kb on + strand at 783.450 kb on + strand at 783.452 kb on - strand at 783.458 kb on - strand at 783.458 kb on - strand at 783.458 kb on - strand at 783.546 kb on - strand at 783.658 kb on - strand, within BWI76_RS03785 at 783.701 kb on + strand, within BWI76_RS03785 at 783.709 kb on - strand, within BWI76_RS03785 at 783.711 kb on + strand, within BWI76_RS03785 at 783.929 kb on - strand, within BWI76_RS03785 at 784.028 kb on + strand, within BWI76_RS03785 at 784.050 kb on + strand, within BWI76_RS03785 at 784.050 kb on + strand, within BWI76_RS03785 at 784.057 kb on + strand, within BWI76_RS03785 at 784.058 kb on - strand, within BWI76_RS03785 at 784.065 kb on - strand, within BWI76_RS03785 at 784.119 kb on - strand, within BWI76_RS03785 at 784.119 kb on - strand, within BWI76_RS03785 at 784.119 kb on - strand, within BWI76_RS03785 at 784.119 kb on - strand, within BWI76_RS03785 at 784.119 kb on - strand, within BWI76_RS03785 at 784.212 kb on - strand at 784.301 kb on - strand at 784.301 kb on - strand at 784.334 kb on - strand at 784.427 kb on - strand, within BWI76_RS03790 at 784.457 kb on + strand, within BWI76_RS03790 at 784.504 kb on + strand, within BWI76_RS03790 at 784.512 kb on - strand, within BWI76_RS03790 at 784.692 kb on + strand, within BWI76_RS03790 at 784.725 kb on + strand, within BWI76_RS03790 at 784.939 kb on + strand at 784.959 kb on + strand at 784.997 kb on + strand at 785.090 kb on - strand at 785.151 kb on + strand, within BWI76_RS03795 at 785.159 kb on - strand, within BWI76_RS03795
Per-strain Table
Position Strand Gene LocusTag Fraction Dictyostellum sp.mixed culture-1 remove 782,482 - BWI76_RS03775 0.52 -0.8 782,485 + BWI76_RS03775 0.52 +1.4 782,489 - BWI76_RS03775 0.53 -2.1 782,490 + BWI76_RS03775 0.54 -1.2 782,490 + BWI76_RS03775 0.54 -0.5 782,498 - BWI76_RS03775 0.55 +1.4 782,512 + BWI76_RS03775 0.59 +0.6 782,512 + BWI76_RS03775 0.59 -1.9 782,512 + BWI76_RS03775 0.59 -1.2 782,512 + BWI76_RS03775 0.59 +1.4 782,512 + BWI76_RS03775 0.59 -1.6 782,512 + BWI76_RS03775 0.59 +0.5 782,512 + BWI76_RS03775 0.59 -1.9 782,512 + BWI76_RS03775 0.59 +0.8 782,512 + BWI76_RS03775 0.59 -0.1 782,512 + BWI76_RS03775 0.59 -0.7 782,512 + BWI76_RS03775 0.59 -0.7 782,512 + BWI76_RS03775 0.59 -0.7 782,512 + BWI76_RS03775 0.59 -0.1 782,520 - BWI76_RS03775 0.60 +0.8 782,520 - BWI76_RS03775 0.60 -0.5 782,520 - BWI76_RS03775 0.60 -1.0 782,520 - BWI76_RS03775 0.60 -1.5 782,520 - BWI76_RS03775 0.60 -1.7 782,520 - BWI76_RS03775 0.60 -0.1 782,520 - BWI76_RS03775 0.60 -0.5 782,520 - BWI76_RS03775 0.60 -0.2 782,520 - BWI76_RS03775 0.60 +0.6 782,563 + BWI76_RS03775 0.70 -1.9 782,563 + BWI76_RS03775 0.70 -1.5 782,566 - BWI76_RS03775 0.71 +1.0 782,571 + BWI76_RS03775 0.72 +2.7 782,571 - BWI76_RS03775 0.72 +1.3 782,573 + +1.4 782,573 + BWI76_RS03775 0.73 -0.2 782,573 + BWI76_RS03775 0.73 +1.0 782,580 + BWI76_RS03775 0.74 -0.6 782,580 + BWI76_RS03775 0.74 +0.7 782,581 - BWI76_RS03775 0.74 -0.9 782,581 - BWI76_RS03775 0.74 +0.0 782,581 - BWI76_RS03775 0.74 +0.4 782,582 - BWI76_RS03775 0.75 -0.3 782,585 + BWI76_RS03775 0.75 -0.3 782,590 + BWI76_RS03775 0.77 -1.9 782,590 + BWI76_RS03775 0.77 -0.1 782,611 - BWI76_RS03775 0.81 -2.5 782,611 - BWI76_RS03775 0.81 +0.7 782,627 + BWI76_RS03775 0.85 +0.3 782,635 - BWI76_RS03775 0.87 -0.5 782,635 - BWI76_RS03775 0.87 -0.3 782,643 + BWI76_RS03775 0.89 -1.3 782,645 + BWI76_RS03775 0.89 +1.1 782,651 - +2.8 782,651 - -0.4 782,660 + -0.7 782,732 + -0.5 782,742 + -1.3 782,751 + -0.7 782,751 + -0.2 782,751 + +0.3 782,752 + -0.0 782,752 + -0.6 782,752 + -0.7 782,752 + -0.1 782,752 + -0.4 782,752 + -0.1 782,752 + +0.2 782,752 + +0.8 782,752 + +0.4 782,752 + -0.9 782,752 + +0.6 782,752 + -0.6 782,752 + -0.8 782,752 + +1.8 782,752 + -0.7 782,752 + -1.6 782,752 + +1.3 782,752 + -1.0 782,752 + -1.9 782,754 - -0.6 782,757 + +0.2 782,759 - +2.3 782,760 - -2.3 782,760 - -0.2 782,760 - +1.0 782,760 - +0.8 782,760 - -1.3 782,760 - -0.1 782,760 - +0.2 782,760 - +1.0 782,760 - -1.0 782,760 - -0.1 782,760 - +0.2 782,788 + +0.8 782,801 + -2.3 782,821 + +0.8 782,828 + -0.1 782,828 + +1.7 782,828 + +0.0 782,828 + -0.8 782,828 + -0.4 782,828 + -0.1 782,828 + -1.2 782,828 + +0.3 782,828 + -0.3 782,828 + +0.5 782,832 + -1.4 782,832 + -1.7 782,832 + +0.2 782,832 + -0.6 782,836 - -1.5 782,836 - -0.1 782,836 - +0.7 782,836 - -1.3 782,836 - +0.9 782,836 - +3.3 782,836 - +2.4 782,836 - -0.2 782,836 - -0.4 782,836 - +1.4 782,836 - -0.5 782,836 - +0.3 782,840 - +0.3 782,840 - +0.1 782,840 - -0.4 782,841 - -0.2 782,847 - BWI76_RS03780 0.10 -0.1 782,852 - BWI76_RS03780 0.11 +0.7 782,856 + BWI76_RS03780 0.12 -0.2 782,857 - BWI76_RS03780 0.12 -0.0 782,862 - BWI76_RS03780 0.13 -1.3 782,877 + BWI76_RS03780 0.15 -1.2 782,882 + BWI76_RS03780 0.16 +0.7 782,882 + BWI76_RS03780 0.16 +0.3 782,882 + BWI76_RS03780 0.16 -0.4 782,884 + BWI76_RS03780 0.16 -2.1 782,884 + BWI76_RS03780 0.16 -1.6 782,885 - BWI76_RS03780 0.16 +1.1 782,889 + BWI76_RS03780 0.17 -0.5 782,892 - BWI76_RS03780 0.17 -0.3 782,892 - BWI76_RS03780 0.17 +0.1 782,892 - BWI76_RS03780 0.17 -1.1 782,893 + BWI76_RS03780 0.17 -0.1 782,902 + BWI76_RS03780 0.19 -0.1 782,910 + BWI76_RS03780 0.20 +0.3 782,920 + BWI76_RS03780 0.22 +0.7 782,928 - BWI76_RS03780 0.23 -0.7 782,974 + BWI76_RS03780 0.30 +0.7 783,013 + BWI76_RS03780 0.36 +0.3 783,013 + BWI76_RS03780 0.36 +2.0 783,013 + BWI76_RS03780 0.36 +0.8 783,021 - BWI76_RS03780 0.37 -1.0 783,021 - BWI76_RS03780 0.37 +0.7 783,021 - BWI76_RS03780 0.37 -0.7 783,108 - BWI76_RS03780 0.51 -0.0 783,108 - BWI76_RS03780 0.51 +0.5 783,177 - BWI76_RS03780 0.62 -1.3 783,271 + BWI76_RS03780 0.76 -2.0 783,299 + BWI76_RS03780 0.81 +0.4 783,313 + BWI76_RS03780 0.83 +1.5 783,321 - BWI76_RS03780 0.84 -0.5 783,346 + BWI76_RS03780 0.88 -1.2 783,346 + BWI76_RS03780 0.88 -0.0 783,351 + BWI76_RS03780 0.89 -0.1 783,396 + -1.2 783,411 + +1.1 783,440 + +0.6 783,441 - +1.4 783,444 + -0.1 783,450 + +0.7 783,450 + +2.5 783,450 + +0.3 783,450 + -0.2 783,452 - +0.7 783,458 - +0.4 783,458 - +1.1 783,458 - -0.8 783,546 - -2.4 783,658 - BWI76_RS03785 0.23 +0.4 783,701 + BWI76_RS03785 0.28 +0.1 783,709 - BWI76_RS03785 0.29 +1.7 783,711 + BWI76_RS03785 0.30 +1.1 783,929 - BWI76_RS03785 0.56 +0.8 784,028 + BWI76_RS03785 0.69 -0.5 784,050 + BWI76_RS03785 0.71 +1.7 784,050 + BWI76_RS03785 0.71 +0.0 784,057 + BWI76_RS03785 0.72 -0.3 784,058 - BWI76_RS03785 0.72 +1.7 784,065 - BWI76_RS03785 0.73 -0.6 784,119 - BWI76_RS03785 0.80 -0.1 784,119 - BWI76_RS03785 0.80 -0.9 784,119 - BWI76_RS03785 0.80 +0.6 784,119 - BWI76_RS03785 0.80 +0.8 784,119 - BWI76_RS03785 0.80 +0.3 784,212 - -0.3 784,301 - -0.8 784,301 - -0.7 784,334 - -0.0 784,427 - BWI76_RS03790 0.13 -1.3 784,457 + BWI76_RS03790 0.20 -0.2 784,504 + BWI76_RS03790 0.30 -0.4 784,512 - BWI76_RS03790 0.32 +2.2 784,692 + BWI76_RS03790 0.71 -0.4 784,725 + BWI76_RS03790 0.79 -0.6 784,939 + +0.7 784,959 + +0.4 784,997 + +1.6 785,090 - -0.4 785,151 + BWI76_RS03795 0.11 -1.3 785,159 - BWI76_RS03795 0.12 +0.3
Or see this region's nucleotide sequence