Experiment: Dictyostellum sp.mixed culture-1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS01365 and BWI76_RS01370 are separated by 1 nucleotides BWI76_RS01370 and BWI76_RS01375 are separated by 64 nucleotides BWI76_RS01375 and BWI76_RS01380 overlap by 1 nucleotides BWI76_RS01380 and BWI76_RS01385 are separated by 41 nucleotides
BWI76_RS01365: BWI76_RS01365 - multifunctional fatty acid oxidation complex subunit alpha, at 278,637 to 280,826
_RS01365
BWI76_RS01370: BWI76_RS01370 - 3-hydroxyacyl-CoA dehydrogenase, at 280,828 to 280,953
_RS01370
BWI76_RS01375: BWI76_RS01375 - Xaa-Pro dipeptidase, at 281,018 to 282,349
_RS01375
BWI76_RS01380: BWI76_RS01380 - YigZ family protein, at 282,349 to 282,963
_RS01380
BWI76_RS01385: BWI76_RS01385 - potassium transporter, at 283,005 to 284,456
_RS01385
Position (kb) 281
282
283 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 280.157 kb on + strand, within BWI76_RS01365 at 280.192 kb on + strand, within BWI76_RS01365 at 280.298 kb on + strand, within BWI76_RS01365 at 280.298 kb on + strand, within BWI76_RS01365 at 280.311 kb on + strand, within BWI76_RS01365 at 280.319 kb on - strand, within BWI76_RS01365 at 280.485 kb on - strand, within BWI76_RS01365 at 280.495 kb on - strand, within BWI76_RS01365 at 280.583 kb on - strand, within BWI76_RS01365 at 280.601 kb on - strand, within BWI76_RS01365 at 280.690 kb on + strand at 280.710 kb on - strand at 280.724 kb on - strand at 280.805 kb on + strand at 280.951 kb on - strand at 280.971 kb on - strand at 281.092 kb on + strand at 281.121 kb on + strand at 281.121 kb on + strand at 281.204 kb on + strand, within BWI76_RS01375 at 281.289 kb on + strand, within BWI76_RS01375 at 281.342 kb on - strand, within BWI76_RS01375 at 281.457 kb on + strand, within BWI76_RS01375 at 281.508 kb on + strand, within BWI76_RS01375 at 281.656 kb on - strand, within BWI76_RS01375 at 281.686 kb on + strand, within BWI76_RS01375 at 281.698 kb on + strand, within BWI76_RS01375 at 281.711 kb on - strand, within BWI76_RS01375 at 281.737 kb on + strand, within BWI76_RS01375 at 281.869 kb on + strand, within BWI76_RS01375 at 281.869 kb on + strand, within BWI76_RS01375 at 281.869 kb on + strand, within BWI76_RS01375 at 281.869 kb on + strand, within BWI76_RS01375 at 281.877 kb on - strand, within BWI76_RS01375 at 281.902 kb on + strand, within BWI76_RS01375 at 281.959 kb on - strand, within BWI76_RS01375 at 282.032 kb on - strand, within BWI76_RS01375 at 282.032 kb on - strand, within BWI76_RS01375 at 282.076 kb on + strand, within BWI76_RS01375 at 282.095 kb on - strand, within BWI76_RS01375 at 282.095 kb on - strand, within BWI76_RS01375 at 282.099 kb on - strand, within BWI76_RS01375 at 282.100 kb on - strand, within BWI76_RS01375 at 282.220 kb on + strand at 282.230 kb on + strand at 282.479 kb on - strand, within BWI76_RS01380 at 282.591 kb on + strand, within BWI76_RS01380 at 282.719 kb on + strand, within BWI76_RS01380 at 282.720 kb on - strand, within BWI76_RS01380 at 283.237 kb on - strand, within BWI76_RS01385 at 283.264 kb on + strand, within BWI76_RS01385
Per-strain Table
Position Strand Gene LocusTag Fraction Dictyostellum sp.mixed culture-1 remove 280,157 + BWI76_RS01365 0.69 +2.6 280,192 + BWI76_RS01365 0.71 -0.4 280,298 + BWI76_RS01365 0.76 -2.5 280,298 + BWI76_RS01365 0.76 -0.5 280,311 + BWI76_RS01365 0.76 -0.2 280,319 - BWI76_RS01365 0.77 +0.2 280,485 - BWI76_RS01365 0.84 -3.4 280,495 - BWI76_RS01365 0.85 +0.4 280,583 - BWI76_RS01365 0.89 -1.1 280,601 - BWI76_RS01365 0.90 -1.4 280,690 + -0.5 280,710 - +0.2 280,724 - -0.3 280,805 + +2.7 280,951 - +1.0 280,971 - -1.3 281,092 + +0.9 281,121 + +1.3 281,121 + +1.1 281,204 + BWI76_RS01375 0.14 -1.3 281,289 + BWI76_RS01375 0.20 +0.2 281,342 - BWI76_RS01375 0.24 -1.1 281,457 + BWI76_RS01375 0.33 -0.6 281,508 + BWI76_RS01375 0.37 +0.7 281,656 - BWI76_RS01375 0.48 +1.7 281,686 + BWI76_RS01375 0.50 -0.1 281,698 + BWI76_RS01375 0.51 -0.4 281,711 - BWI76_RS01375 0.52 -0.5 281,737 + BWI76_RS01375 0.54 +0.5 281,869 + BWI76_RS01375 0.64 -0.8 281,869 + BWI76_RS01375 0.64 +0.8 281,869 + BWI76_RS01375 0.64 -1.0 281,869 + BWI76_RS01375 0.64 -0.7 281,877 - BWI76_RS01375 0.64 +0.0 281,902 + BWI76_RS01375 0.66 +0.2 281,959 - BWI76_RS01375 0.71 +0.6 282,032 - BWI76_RS01375 0.76 +2.8 282,032 - BWI76_RS01375 0.76 +0.7 282,076 + BWI76_RS01375 0.79 -0.3 282,095 - BWI76_RS01375 0.81 +2.0 282,095 - BWI76_RS01375 0.81 +1.8 282,099 - BWI76_RS01375 0.81 +3.0 282,100 - BWI76_RS01375 0.81 +3.2 282,220 + -1.6 282,230 + -0.3 282,479 - BWI76_RS01380 0.21 -1.5 282,591 + BWI76_RS01380 0.39 -0.9 282,719 + BWI76_RS01380 0.60 -2.0 282,720 - BWI76_RS01380 0.60 -1.4 283,237 - BWI76_RS01385 0.16 +0.5 283,264 + BWI76_RS01385 0.18 +0.7
Or see this region's nucleotide sequence