Experiment: Dictyostellum sp.mixed culture-1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS01030 and BWI76_RS01035 are separated by 18 nucleotides BWI76_RS01035 and BWI76_RS01040 are separated by 221 nucleotides
BWI76_RS01030: BWI76_RS01030 - cytosine/purine, uracil, thiamine, allantoin permease family protein, at 210,461 to 211,876
_RS01030
BWI76_RS01035: BWI76_RS01035 - ADP-ribosylation/crystallin J1, at 211,895 to 212,911
_RS01035
BWI76_RS01040: BWI76_RS01040 - transcriptional regulator, at 213,133 to 213,918
_RS01040
Position (kb) 211
212
213 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 211.104 kb on + strand, within BWI76_RS01030 at 211.256 kb on - strand, within BWI76_RS01030 at 211.441 kb on + strand, within BWI76_RS01030 at 211.482 kb on - strand, within BWI76_RS01030 at 211.626 kb on + strand, within BWI76_RS01030 at 211.856 kb on + strand at 211.886 kb on - strand at 211.990 kb on + strand at 212.493 kb on + strand, within BWI76_RS01035 at 212.568 kb on - strand, within BWI76_RS01035 at 212.690 kb on + strand, within BWI76_RS01035 at 212.699 kb on + strand, within BWI76_RS01035 at 212.703 kb on - strand, within BWI76_RS01035 at 212.707 kb on - strand, within BWI76_RS01035 at 212.815 kb on + strand at 212.815 kb on + strand at 212.823 kb on + strand at 213.173 kb on + strand at 213.192 kb on + strand at 213.192 kb on + strand at 213.192 kb on + strand at 213.204 kb on + strand at 213.290 kb on + strand, within BWI76_RS01040 at 213.298 kb on - strand, within BWI76_RS01040 at 213.315 kb on + strand, within BWI76_RS01040 at 213.315 kb on + strand, within BWI76_RS01040 at 213.336 kb on + strand, within BWI76_RS01040 at 213.398 kb on + strand, within BWI76_RS01040 at 213.398 kb on + strand, within BWI76_RS01040 at 213.398 kb on + strand, within BWI76_RS01040 at 213.406 kb on - strand, within BWI76_RS01040 at 213.406 kb on - strand at 213.406 kb on - strand, within BWI76_RS01040 at 213.527 kb on + strand, within BWI76_RS01040 at 213.556 kb on + strand, within BWI76_RS01040 at 213.556 kb on + strand, within BWI76_RS01040 at 213.561 kb on + strand, within BWI76_RS01040 at 213.562 kb on + strand, within BWI76_RS01040 at 213.696 kb on + strand, within BWI76_RS01040 at 213.770 kb on - strand, within BWI76_RS01040 at 213.782 kb on + strand, within BWI76_RS01040 at 213.803 kb on - strand, within BWI76_RS01040 at 213.815 kb on + strand, within BWI76_RS01040 at 213.821 kb on + strand, within BWI76_RS01040 at 213.821 kb on + strand, within BWI76_RS01040 at 213.829 kb on - strand at 213.864 kb on + strand at 213.870 kb on + strand at 213.878 kb on - strand at 213.887 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Dictyostellum sp.mixed culture-1 remove 211,104 + BWI76_RS01030 0.45 +0.1 211,256 - BWI76_RS01030 0.56 -0.5 211,441 + BWI76_RS01030 0.69 +1.7 211,482 - BWI76_RS01030 0.72 -0.3 211,626 + BWI76_RS01030 0.82 -0.9 211,856 + -0.4 211,886 - +0.8 211,990 + +0.8 212,493 + BWI76_RS01035 0.59 -0.6 212,568 - BWI76_RS01035 0.66 +2.5 212,690 + BWI76_RS01035 0.78 +2.7 212,699 + BWI76_RS01035 0.79 +1.9 212,703 - BWI76_RS01035 0.79 +1.6 212,707 - BWI76_RS01035 0.80 -0.2 212,815 + -1.2 212,815 + +0.3 212,823 + +0.6 213,173 + +0.3 213,192 + -0.3 213,192 + +1.1 213,192 + +0.4 213,204 + +1.9 213,290 + BWI76_RS01040 0.20 -1.0 213,298 - BWI76_RS01040 0.21 -2.9 213,315 + BWI76_RS01040 0.23 -0.8 213,315 + BWI76_RS01040 0.23 -0.6 213,336 + BWI76_RS01040 0.26 +0.4 213,398 + BWI76_RS01040 0.34 -1.2 213,398 + BWI76_RS01040 0.34 -0.8 213,398 + BWI76_RS01040 0.34 -0.3 213,406 - BWI76_RS01040 0.35 -0.6 213,406 - -0.6 213,406 - BWI76_RS01040 0.35 -1.3 213,527 + BWI76_RS01040 0.50 -0.3 213,556 + BWI76_RS01040 0.54 -0.0 213,556 + BWI76_RS01040 0.54 -1.5 213,561 + BWI76_RS01040 0.54 +0.6 213,562 + BWI76_RS01040 0.55 -0.5 213,696 + BWI76_RS01040 0.72 -2.6 213,770 - BWI76_RS01040 0.81 -1.8 213,782 + BWI76_RS01040 0.83 +0.8 213,803 - BWI76_RS01040 0.85 -1.4 213,815 + BWI76_RS01040 0.87 +0.1 213,821 + BWI76_RS01040 0.88 -1.9 213,821 + BWI76_RS01040 0.88 +0.2 213,829 - -1.5 213,864 + -1.1 213,870 + -0.3 213,878 - -0.0 213,887 + +0.6
Or see this region's nucleotide sequence