Experiment: Tetrahymena sp., Mixed culture-1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS26595 and BWI76_RS26600 are separated by 35 nucleotides BWI76_RS26600 and BWI76_RS26605 are separated by 101 nucleotides BWI76_RS26605 and BWI76_RS26610 are separated by 7 nucleotides
BWI76_RS26595: BWI76_RS26595 - FAD-dependent oxidoreductase, at 5,505,378 to 5,506,577
_RS26595
BWI76_RS26600: BWI76_RS26600 - hypothetical protein, at 5,506,613 to 5,506,912
_RS26600
BWI76_RS26605: BWI76_RS26605 - 16S rRNA (guanine(1516)-N(2))-methyltransferase, at 5,507,014 to 5,507,793
_RS26605
BWI76_RS26610: BWI76_RS26610 - oligopeptidase A, at 5,507,801 to 5,509,843
_RS26610
Position (kb) 5507
5508 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 5506.066 kb on + strand, within BWI76_RS26595 at 5506.074 kb on - strand, within BWI76_RS26595 at 5506.167 kb on - strand, within BWI76_RS26595 at 5506.184 kb on - strand, within BWI76_RS26595 at 5506.407 kb on - strand, within BWI76_RS26595 at 5506.407 kb on - strand, within BWI76_RS26595 at 5506.644 kb on + strand, within BWI76_RS26600 at 5506.644 kb on + strand, within BWI76_RS26600 at 5506.652 kb on - strand, within BWI76_RS26600 at 5506.659 kb on + strand, within BWI76_RS26600 at 5506.700 kb on + strand, within BWI76_RS26600 at 5506.708 kb on - strand, within BWI76_RS26600 at 5506.723 kb on - strand, within BWI76_RS26600 at 5506.754 kb on - strand, within BWI76_RS26600 at 5506.820 kb on - strand, within BWI76_RS26600 at 5506.877 kb on + strand, within BWI76_RS26600 at 5506.877 kb on + strand, within BWI76_RS26600 at 5506.885 kb on - strand at 5506.919 kb on - strand at 5507.148 kb on - strand, within BWI76_RS26605 at 5507.185 kb on - strand, within BWI76_RS26605 at 5507.285 kb on + strand, within BWI76_RS26605 at 5507.290 kb on + strand, within BWI76_RS26605 at 5507.307 kb on + strand, within BWI76_RS26605 at 5507.315 kb on - strand, within BWI76_RS26605 at 5507.315 kb on - strand, within BWI76_RS26605 at 5507.315 kb on - strand, within BWI76_RS26605 at 5507.339 kb on - strand, within BWI76_RS26605 at 5507.390 kb on + strand, within BWI76_RS26605 at 5507.406 kb on + strand, within BWI76_RS26605 at 5507.464 kb on + strand, within BWI76_RS26605 at 5507.739 kb on + strand at 5507.814 kb on - strand at 5508.144 kb on + strand, within BWI76_RS26610 at 5508.147 kb on - strand, within BWI76_RS26610 at 5508.160 kb on - strand, within BWI76_RS26610 at 5508.372 kb on - strand, within BWI76_RS26610 at 5508.404 kb on + strand, within BWI76_RS26610 at 5508.424 kb on - strand, within BWI76_RS26610 at 5508.480 kb on - strand, within BWI76_RS26610 at 5508.509 kb on + strand at 5508.590 kb on - strand, within BWI76_RS26610 at 5508.729 kb on + strand, within BWI76_RS26610 at 5508.788 kb on - strand, within BWI76_RS26610
Per-strain Table
Position Strand Gene LocusTag Fraction Tetrahymena sp., Mixed culture-1 remove 5,506,066 + BWI76_RS26595 0.57 +0.7 5,506,074 - BWI76_RS26595 0.58 +0.2 5,506,167 - BWI76_RS26595 0.66 -2.2 5,506,184 - BWI76_RS26595 0.67 +0.1 5,506,407 - BWI76_RS26595 0.86 -0.5 5,506,407 - BWI76_RS26595 0.86 -0.0 5,506,644 + BWI76_RS26600 0.10 +1.0 5,506,644 + BWI76_RS26600 0.10 -0.8 5,506,652 - BWI76_RS26600 0.13 -0.5 5,506,659 + BWI76_RS26600 0.15 +0.7 5,506,700 + BWI76_RS26600 0.29 +0.7 5,506,708 - BWI76_RS26600 0.32 +1.4 5,506,723 - BWI76_RS26600 0.37 -0.3 5,506,754 - BWI76_RS26600 0.47 -1.1 5,506,820 - BWI76_RS26600 0.69 +0.6 5,506,877 + BWI76_RS26600 0.88 +1.8 5,506,877 + BWI76_RS26600 0.88 +1.7 5,506,885 - +1.2 5,506,919 - +0.4 5,507,148 - BWI76_RS26605 0.17 -0.0 5,507,185 - BWI76_RS26605 0.22 +0.8 5,507,285 + BWI76_RS26605 0.35 -1.0 5,507,290 + BWI76_RS26605 0.35 +1.8 5,507,307 + BWI76_RS26605 0.38 -0.3 5,507,315 - BWI76_RS26605 0.39 -1.7 5,507,315 - BWI76_RS26605 0.39 -0.8 5,507,315 - BWI76_RS26605 0.39 -0.6 5,507,339 - BWI76_RS26605 0.42 -1.2 5,507,390 + BWI76_RS26605 0.48 +0.1 5,507,406 + BWI76_RS26605 0.50 -1.2 5,507,464 + BWI76_RS26605 0.58 -1.2 5,507,739 + -2.9 5,507,814 - -0.9 5,508,144 + BWI76_RS26610 0.17 -0.4 5,508,147 - BWI76_RS26610 0.17 +0.1 5,508,160 - BWI76_RS26610 0.18 +0.9 5,508,372 - BWI76_RS26610 0.28 -0.3 5,508,404 + BWI76_RS26610 0.30 -3.6 5,508,424 - BWI76_RS26610 0.30 +0.0 5,508,480 - BWI76_RS26610 0.33 -0.6 5,508,509 + +0.2 5,508,590 - BWI76_RS26610 0.39 +0.9 5,508,729 + BWI76_RS26610 0.45 +0.9 5,508,788 - BWI76_RS26610 0.48 +0.9
Or see this region's nucleotide sequence