Experiment: Tetrahymena sp., Mixed culture-1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS26515 and BWI76_RS26520 overlap by 1 nucleotides BWI76_RS26520 and BWI76_RS26525 are separated by 5 nucleotides BWI76_RS26525 and BWI76_RS26530 are separated by 404 nucleotides
BWI76_RS26515: BWI76_RS26515 - nickel import ATP-binding protein NikD, at 5,488,317 to 5,489,078
_RS26515
BWI76_RS26520: BWI76_RS26520 - nickel import ATP-binding protein NikE, at 5,489,078 to 5,489,848
_RS26520
BWI76_RS26525: BWI76_RS26525 - nickel-responsive transcriptional regulator NikR, at 5,489,854 to 5,490,270
_RS26525
BWI76_RS26530: BWI76_RS26530 - MgtE integral membrane protein, at 5,490,675 to 5,491,688
_RS26530
Position (kb) 5489
5490
5491 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 5488.972 kb on + strand, within BWI76_RS26515 at 5488.980 kb on - strand, within BWI76_RS26515 at 5489.080 kb on - strand at 5489.089 kb on - strand at 5489.140 kb on + strand at 5489.338 kb on - strand, within BWI76_RS26520 at 5489.343 kb on + strand, within BWI76_RS26520 at 5489.401 kb on - strand, within BWI76_RS26520 at 5489.443 kb on - strand, within BWI76_RS26520 at 5489.460 kb on - strand, within BWI76_RS26520 at 5489.493 kb on - strand, within BWI76_RS26520 at 5489.493 kb on - strand, within BWI76_RS26520 at 5489.526 kb on - strand, within BWI76_RS26520 at 5489.875 kb on - strand at 5489.914 kb on - strand, within BWI76_RS26525 at 5489.956 kb on + strand, within BWI76_RS26525 at 5490.001 kb on + strand, within BWI76_RS26525 at 5490.001 kb on + strand, within BWI76_RS26525 at 5490.009 kb on - strand, within BWI76_RS26525 at 5490.009 kb on - strand, within BWI76_RS26525 at 5490.107 kb on + strand, within BWI76_RS26525 at 5490.202 kb on + strand, within BWI76_RS26525 at 5490.264 kb on + strand at 5490.264 kb on + strand at 5490.264 kb on + strand at 5490.266 kb on + strand at 5490.272 kb on - strand at 5490.272 kb on - strand at 5490.575 kb on + strand at 5490.751 kb on - strand at 5490.885 kb on - strand, within BWI76_RS26530 at 5491.020 kb on - strand, within BWI76_RS26530 at 5491.115 kb on + strand, within BWI76_RS26530 at 5491.115 kb on + strand, within BWI76_RS26530 at 5491.123 kb on - strand, within BWI76_RS26530 at 5491.226 kb on - strand, within BWI76_RS26530
Per-strain Table
Position Strand Gene LocusTag Fraction Tetrahymena sp., Mixed culture-1 remove 5,488,972 + BWI76_RS26515 0.86 +0.4 5,488,980 - BWI76_RS26515 0.87 +0.4 5,489,080 - +0.7 5,489,089 - -1.3 5,489,140 + -3.3 5,489,338 - BWI76_RS26520 0.34 +0.3 5,489,343 + BWI76_RS26520 0.34 +1.0 5,489,401 - BWI76_RS26520 0.42 -0.4 5,489,443 - BWI76_RS26520 0.47 -2.3 5,489,460 - BWI76_RS26520 0.50 +0.9 5,489,493 - BWI76_RS26520 0.54 +0.6 5,489,493 - BWI76_RS26520 0.54 -0.0 5,489,526 - BWI76_RS26520 0.58 -2.3 5,489,875 - +1.5 5,489,914 - BWI76_RS26525 0.14 -0.2 5,489,956 + BWI76_RS26525 0.24 -0.8 5,490,001 + BWI76_RS26525 0.35 +1.7 5,490,001 + BWI76_RS26525 0.35 +1.1 5,490,009 - BWI76_RS26525 0.37 +0.6 5,490,009 - BWI76_RS26525 0.37 -0.9 5,490,107 + BWI76_RS26525 0.61 +0.6 5,490,202 + BWI76_RS26525 0.83 +0.9 5,490,264 + -0.2 5,490,264 + +1.2 5,490,264 + -0.7 5,490,266 + -1.1 5,490,272 - +0.3 5,490,272 - -0.4 5,490,575 + -1.0 5,490,751 - -1.1 5,490,885 - BWI76_RS26530 0.21 +0.5 5,491,020 - BWI76_RS26530 0.34 +0.1 5,491,115 + BWI76_RS26530 0.43 +1.0 5,491,115 + BWI76_RS26530 0.43 -2.0 5,491,123 - BWI76_RS26530 0.44 -1.5 5,491,226 - BWI76_RS26530 0.54 +0.3
Or see this region's nucleotide sequence