Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS26205

Experiment: Tetrahymena sp., Mixed culture-1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS26200 and BWI76_RS26205 overlap by 1 nucleotidesBWI76_RS26205 and BWI76_RS26210 are separated by 80 nucleotides BWI76_RS26200: BWI76_RS26200 - starch synthase, at 5,419,455 to 5,420,888 _RS26200 BWI76_RS26205: BWI76_RS26205 - glucose-1-phosphate adenylyltransferase, at 5,420,888 to 5,422,183 _RS26205 BWI76_RS26210: BWI76_RS26210 - glycogen debranching enzyme, at 5,422,264 to 5,424,240 _RS26210 Position (kb) 5420 5421 5422 5423Strain fitness (log2 ratio) -3 -2 -1 0 1at 5420.112 kb on - strand, within BWI76_RS26200at 5420.273 kb on - strand, within BWI76_RS26200at 5420.275 kb on + strand, within BWI76_RS26200at 5420.280 kb on + strand, within BWI76_RS26200at 5420.283 kb on - strand, within BWI76_RS26200at 5420.578 kb on + strand, within BWI76_RS26200at 5420.670 kb on - strand, within BWI76_RS26200at 5420.724 kb on - strand, within BWI76_RS26200at 5420.852 kb on + strandat 5420.869 kb on - strandat 5420.896 kb on + strandat 5420.904 kb on - strandat 5421.000 kb on + strandat 5421.506 kb on - strand, within BWI76_RS26205at 5421.640 kb on + strand, within BWI76_RS26205at 5421.648 kb on - strand, within BWI76_RS26205at 5421.946 kb on + strand, within BWI76_RS26205at 5422.013 kb on + strand, within BWI76_RS26205at 5422.099 kb on - strandat 5422.263 kb on - strandat 5422.333 kb on - strandat 5422.360 kb on + strandat 5422.373 kb on + strandat 5422.381 kb on - strandat 5422.462 kb on - strand, within BWI76_RS26210at 5422.483 kb on + strand, within BWI76_RS26210at 5422.516 kb on + strand, within BWI76_RS26210at 5422.864 kb on - strand, within BWI76_RS26210at 5422.910 kb on - strand, within BWI76_RS26210at 5422.985 kb on + strand, within BWI76_RS26210

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Per-strain Table

Position Strand Gene LocusTag Fraction Tetrahymena sp., Mixed culture-1
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5,420,112 - BWI76_RS26200 0.46 -0.9
5,420,273 - BWI76_RS26200 0.57 -0.8
5,420,275 + BWI76_RS26200 0.57 -0.9
5,420,280 + BWI76_RS26200 0.58 -1.9
5,420,283 - BWI76_RS26200 0.58 -1.9
5,420,578 + BWI76_RS26200 0.78 -0.3
5,420,670 - BWI76_RS26200 0.85 -0.4
5,420,724 - BWI76_RS26200 0.88 -3.0
5,420,852 + -1.7
5,420,869 - -1.1
5,420,896 + -0.5
5,420,904 - -0.6
5,421,000 + -1.5
5,421,506 - BWI76_RS26205 0.48 -1.3
5,421,640 + BWI76_RS26205 0.58 -0.6
5,421,648 - BWI76_RS26205 0.59 -1.8
5,421,946 + BWI76_RS26205 0.82 +0.8
5,422,013 + BWI76_RS26205 0.87 +1.2
5,422,099 - -1.9
5,422,263 - -1.9
5,422,333 - +0.8
5,422,360 + -1.0
5,422,373 + -1.5
5,422,381 - -1.0
5,422,462 - BWI76_RS26210 0.10 -2.5
5,422,483 + BWI76_RS26210 0.11 -1.6
5,422,516 + BWI76_RS26210 0.13 +0.5
5,422,864 - BWI76_RS26210 0.30 -0.4
5,422,910 - BWI76_RS26210 0.33 -0.7
5,422,985 + BWI76_RS26210 0.36 +0.6

Or see this region's nucleotide sequence