Experiment: Tetrahymena sp., Mixed culture-1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS26190 and BWI76_RS26195 are separated by 52 nucleotides BWI76_RS26195 and BWI76_RS26200 are separated by 15 nucleotides
BWI76_RS26190: BWI76_RS26190 - glycerol-3-phosphate dehydrogenase, at 5,415,431 to 5,416,939
_RS26190
BWI76_RS26195: BWI76_RS26195 - glycogen phosphorylase, at 5,416,992 to 5,419,439
_RS26195
BWI76_RS26200: BWI76_RS26200 - starch synthase, at 5,419,455 to 5,420,888
_RS26200
Position (kb) 5416
5417
5418
5419
5420 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 5416.162 kb on + strand, within BWI76_RS26190 at 5416.170 kb on - strand, within BWI76_RS26190 at 5416.363 kb on + strand, within BWI76_RS26190 at 5416.492 kb on + strand, within BWI76_RS26190 at 5416.511 kb on - strand, within BWI76_RS26190 at 5416.568 kb on - strand, within BWI76_RS26190 at 5416.871 kb on - strand at 5417.029 kb on + strand at 5417.116 kb on + strand at 5417.116 kb on + strand at 5417.335 kb on + strand, within BWI76_RS26195 at 5417.336 kb on + strand, within BWI76_RS26195 at 5417.413 kb on - strand, within BWI76_RS26195 at 5417.540 kb on + strand, within BWI76_RS26195 at 5417.570 kb on - strand, within BWI76_RS26195 at 5417.788 kb on + strand, within BWI76_RS26195 at 5417.856 kb on - strand, within BWI76_RS26195 at 5417.879 kb on + strand, within BWI76_RS26195 at 5417.946 kb on + strand, within BWI76_RS26195 at 5418.130 kb on - strand, within BWI76_RS26195 at 5418.133 kb on + strand, within BWI76_RS26195 at 5418.140 kb on + strand, within BWI76_RS26195 at 5418.148 kb on - strand, within BWI76_RS26195 at 5418.246 kb on + strand, within BWI76_RS26195 at 5418.359 kb on + strand, within BWI76_RS26195 at 5418.367 kb on - strand, within BWI76_RS26195 at 5418.367 kb on - strand, within BWI76_RS26195 at 5418.520 kb on + strand, within BWI76_RS26195 at 5418.538 kb on - strand, within BWI76_RS26195 at 5418.560 kb on - strand, within BWI76_RS26195 at 5418.560 kb on - strand, within BWI76_RS26195 at 5418.684 kb on + strand, within BWI76_RS26195 at 5418.738 kb on + strand, within BWI76_RS26195 at 5418.757 kb on - strand, within BWI76_RS26195 at 5419.143 kb on + strand, within BWI76_RS26195 at 5419.187 kb on + strand, within BWI76_RS26195 at 5419.195 kb on - strand at 5419.272 kb on + strand at 5419.304 kb on + strand at 5419.378 kb on + strand at 5419.408 kb on - strand at 5420.112 kb on - strand, within BWI76_RS26200 at 5420.273 kb on - strand, within BWI76_RS26200 at 5420.275 kb on + strand, within BWI76_RS26200 at 5420.280 kb on + strand, within BWI76_RS26200 at 5420.283 kb on - strand, within BWI76_RS26200
Per-strain Table
Position Strand Gene LocusTag Fraction Tetrahymena sp., Mixed culture-1 remove 5,416,162 + BWI76_RS26190 0.48 -0.1 5,416,170 - BWI76_RS26190 0.49 -0.2 5,416,363 + BWI76_RS26190 0.62 -1.7 5,416,492 + BWI76_RS26190 0.70 -0.6 5,416,511 - BWI76_RS26190 0.72 -0.9 5,416,568 - BWI76_RS26190 0.75 +0.7 5,416,871 - -3.3 5,417,029 + -2.3 5,417,116 + +0.2 5,417,116 + -1.4 5,417,335 + BWI76_RS26195 0.14 +0.6 5,417,336 + BWI76_RS26195 0.14 -2.8 5,417,413 - BWI76_RS26195 0.17 -1.1 5,417,540 + BWI76_RS26195 0.22 -2.8 5,417,570 - BWI76_RS26195 0.24 -0.1 5,417,788 + BWI76_RS26195 0.33 -3.0 5,417,856 - BWI76_RS26195 0.35 -0.6 5,417,879 + BWI76_RS26195 0.36 -2.5 5,417,946 + BWI76_RS26195 0.39 -0.5 5,418,130 - BWI76_RS26195 0.46 -0.4 5,418,133 + BWI76_RS26195 0.47 +0.5 5,418,140 + BWI76_RS26195 0.47 -0.8 5,418,148 - BWI76_RS26195 0.47 -2.8 5,418,246 + BWI76_RS26195 0.51 -0.1 5,418,359 + BWI76_RS26195 0.56 +0.6 5,418,367 - BWI76_RS26195 0.56 -1.8 5,418,367 - BWI76_RS26195 0.56 -1.0 5,418,520 + BWI76_RS26195 0.62 -1.0 5,418,538 - BWI76_RS26195 0.63 -0.7 5,418,560 - BWI76_RS26195 0.64 -1.4 5,418,560 - BWI76_RS26195 0.64 -1.2 5,418,684 + BWI76_RS26195 0.69 -2.4 5,418,738 + BWI76_RS26195 0.71 -2.7 5,418,757 - BWI76_RS26195 0.72 -2.7 5,419,143 + BWI76_RS26195 0.88 +0.3 5,419,187 + BWI76_RS26195 0.90 -2.2 5,419,195 - +0.4 5,419,272 + -2.4 5,419,304 + -2.0 5,419,378 + -1.1 5,419,408 - -2.1 5,420,112 - BWI76_RS26200 0.46 -0.9 5,420,273 - BWI76_RS26200 0.57 -0.8 5,420,275 + BWI76_RS26200 0.57 -0.9 5,420,280 + BWI76_RS26200 0.58 -1.9 5,420,283 - BWI76_RS26200 0.58 -1.9
Or see this region's nucleotide sequence